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Aliases for RPL23AP62 Gene

Subcategory (RNA class) for RPL23AP62 Gene

lncRNA

Aliases for RPL23AP62 Gene

  • Ribosomal Protein L23a Pseudogene 62 2 3 5
  • RPL23A_24_1177 3

External Ids for RPL23AP62 Gene

ORGUL Members for RPL23AP62 Gene

Previous GeneCards Identifiers for RPL23AP62 Gene

  • GC11U901275
  • GC11M112333

Summaries for RPL23AP62 Gene

GeneCards Summary for RPL23AP62 Gene

RPL23AP62 (Ribosomal Protein L23a Pseudogene 62) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL23AP62 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP62 Gene

Genomics for RPL23AP62 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP62 Gene

Promoters and enhancers for RPL23AP62 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I112459 Enhancer 0.4 Ensembl 0.8 +2.7 2719 0.4 IRF2 PRDM1 RPL23AP62 LOC101928823
GH11I112523 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.2 -63.1 -63114 3.9 USF1 MAX ZNF398 MNT ZIC2 NR2F2 MITF ZNF335 GLIS1 PRDM10 LOC283140 RNU6-44P KCTD9P4 IL18 LOC387810 RPL23AP62 LOC101928823
GH11I112504 Enhancer 0.2 FANTOM5 0.3 -43.2 -43166 0.4 RNU6-44P RPL23AP62 LOC387810 LOC101928823
GH11I112519 Enhancer 0.2 ENCODE 0.2 -58.1 -58053 0.2 LOC387810 RPL23AP62 LOC101928823
GH11I112517 Enhancer 0.2 ENCODE 0.2 -56.5 -56483 1.4 LOC387810 RPL23AP62 LOC101928823
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL23AP62 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL23AP62 Gene

Genomic Locations for RPL23AP62 Gene
chr11:112,461,468-112,461,920
(GRCh38/hg38)
Size:
453 bases
Orientation:
Minus strand
chr11:112,332,191-112,332,643
(GRCh37/hg19)

Genomic View for RPL23AP62 Gene

Genes around RPL23AP62 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP62 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP62 Gene

Proteins for RPL23AP62 Gene

Post-translational modifications for RPL23AP62 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP62 Gene

Domains & Families for RPL23AP62 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP62 Gene

Function for RPL23AP62 Gene

Phenotypes From GWAS Catalog for RPL23AP62 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP62 Gene

Localization for RPL23AP62 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP62 Gene

Pathways & Interactions for RPL23AP62 Gene

SuperPathways for RPL23AP62 Gene

No Data Available

Interacting Proteins for RPL23AP62 Gene

Gene Ontology (GO) - Biological Process for RPL23AP62 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP62 Gene

Drugs & Compounds for RPL23AP62 Gene

No Compound Related Data Available

Transcripts for RPL23AP62 Gene

mRNA/cDNA for RPL23AP62 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP62 Gene

No ASD Table

Relevant External Links for RPL23AP62 Gene

GeneLoc Exon Structure for
RPL23AP62
ECgene alternative splicing isoforms for
RPL23AP62

Expression for RPL23AP62 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP62 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP62 Gene:

RPL23AP62
genes like me logo Genes that share expression patterns with RPL23AP62: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP62 Gene

Orthologs for RPL23AP62 Gene

Evolution for RPL23AP62 Gene

ENSEMBL:
Gene Tree for RPL23AP62 (if available)
TreeFam:
Gene Tree for RPL23AP62 (if available)

No data available for Orthologs for RPL23AP62 Gene

Paralogs for RPL23AP62 Gene

No data available for Paralogs for RPL23AP62 Gene

Variants for RPL23AP62 Gene

Additional Variant Information for RPL23AP62 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP62

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP62 Gene

Disorders for RPL23AP62 Gene

Additional Disease Information for RPL23AP62

Genetic Association Database
(GAD)

No disorders were found for RPL23AP62 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP62 Gene

Publications for RPL23AP62 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins DE … van den Oord EJ (Molecular psychiatry 2011) 44 58

Products for RPL23AP62 Gene

Sources for RPL23AP62 Gene

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