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Aliases for RPL23AP42 Gene

Aliases for RPL23AP42 Gene

  • Ribosomal Protein L23a Pseudogene 42 2 3 5
  • RPL23A_13_431 3
  • HCG16001 3

External Ids for RPL23AP42 Gene

Previous GeneCards Identifiers for RPL23AP42 Gene

  • GC03M162615
  • GC03M161145

Summaries for RPL23AP42 Gene

GeneCards Summary for RPL23AP42 Gene

RPL23AP42 (Ribosomal Protein L23a Pseudogene 42) is a Pseudogene.

Additional gene information for RPL23AP42 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP42 Gene

Genomics for RPL23AP42 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP42 Gene

Promoters and enhancers for RPL23AP42 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I161429 Promoter 0.5 Ensembl 550.8 +0.2 219 0.4 ENSG00000269888 OTOL1 RPL23AP42 LINC02067
GH03I160446 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 26.1 +980.2 980180 5.3 CLOCK SMAD1 ARNT ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 CBX5 TRIM59 ENSG00000248710 RPL23AP42 B3GAT3P1 SCARNA7 SMC4 GC03P160415
GH03I161371 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 10 +57.3 57272 2.6 HDGF PKNOX1 CLOCK NEUROD1 SIN3A ZNF2 ZBTB7B YY1 ETS1 GLIS2 SPTSSB PSMC1P7 RPL23AP42 LINC02067 B3GALNT1
GH03I161220 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10 +207.7 207740 3.3 HDGF PKNOX1 CLOCK SMAD1 ARID4B SIN3A FEZF1 DMAP1 YY1 POLR2B NMD3 ENSG00000271052 SPTSSB B3GALNT1 PSMC1P7 RPL23AP42 EEF1GP4 LOC105374186
GH03I161265 Enhancer 1.3 Ensembl ENCODE dbSUPER 9.8 +162.4 162447 3.9 PKNOX1 FOXA2 NEUROD1 SIN3A ZBTB7B YY1 ATF7 FOS RXRA REST SPTSSB IFT80 PSMC1P7 ENSG00000260572 RPL23AP42 LINC02067 LOC105374187 ENSG00000271052
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL23AP42 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL23AP42 Gene

Genomic Locations for RPL23AP42 Gene
549 bases
Minus strand

Genomic View for RPL23AP42 Gene

Genes around RPL23AP42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP42 Gene

Proteins for RPL23AP42 Gene

Post-translational modifications for RPL23AP42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP42 Gene

Domains & Families for RPL23AP42 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP42 Gene

Function for RPL23AP42 Gene

Phenotypes From GWAS Catalog for RPL23AP42 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP42 Gene

Localization for RPL23AP42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP42 Gene

Pathways & Interactions for RPL23AP42 Gene

SuperPathways for RPL23AP42 Gene

No Data Available

Interacting Proteins for RPL23AP42 Gene

Gene Ontology (GO) - Biological Process for RPL23AP42 Gene


No data available for Pathways by source and SIGNOR curated interactions for RPL23AP42 Gene

Drugs & Compounds for RPL23AP42 Gene

No Compound Related Data Available

Transcripts for RPL23AP42 Gene

mRNA/cDNA for RPL23AP42 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP42 Gene

No ASD Table

Relevant External Links for RPL23AP42 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RPL23AP42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP42 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP42 Gene:

genes like me logo Genes that share expression patterns with RPL23AP42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP42 Gene

Orthologs for RPL23AP42 Gene

Evolution for RPL23AP42 Gene

Gene Tree for RPL23AP42 (if available)
Gene Tree for RPL23AP42 (if available)

No data available for Orthologs for RPL23AP42 Gene

Paralogs for RPL23AP42 Gene

No data available for Paralogs for RPL23AP42 Gene

Variants for RPL23AP42 Gene

Additional Variant Information for RPL23AP42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP42 Gene

Disorders for RPL23AP42 Gene

Additional Disease Information for RPL23AP42

Genetic Association Database

No disorders were found for RPL23AP42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP42 Gene

Publications for RPL23AP42 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6. (PMID: 19738201) Humphries JD … Humphries MJ (Science signaling 2009) 3 58
  3. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 44 58
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  5. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for RPL23AP42 Gene

Sources for RPL23AP42 Gene

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