Aliases for RPL23AP23 Gene

Aliases for RPL23AP23 Gene

  • Ribosomal Protein L23a Pseudogene 23 2 3 5
  • RPL23A_5_178 3

External Ids for RPL23AP23 Gene

Previous GeneCards Identifiers for RPL23AP23 Gene

  • GC01U902276
  • GC01P235460

Summaries for RPL23AP23 Gene

GeneCards Summary for RPL23AP23 Gene

RPL23AP23 (Ribosomal Protein L23a Pseudogene 23) is a Pseudogene.

Additional gene information for RPL23AP23 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL23AP23 Gene

Genomics for RPL23AP23 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP23 Gene

Promoters and enhancers for RPL23AP23 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J235295 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 500.7 +1.1 1146 2.8 FOXK2 HNRNPK ZBTB40 ZNF217 KDM6A TCF7 FOXA1 REST RFX1 CUX1 RPL23AP23 lnc-GGPS1-6 ARID4B GGPS1 TOMM20 RBM34 MG828730-008
GH01J235298 Enhancer 0.8 ENCODE dbSUPER 0.7 +3.3 3307 0.9 ZSCAN5C OSR2 SAP130 ZFHX2 FOXA1 NR2F1 SCRT1 EGR1 PRDM6 ZNF664 GGPS1 ARID4B RPL23AP23 lnc-GGPS1-6 MG828730-008
GH01J235304 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 +9.4 9353 2.2 RFX1 MXI1 OSR2 MYNN ZBTB17 TCF7L2 GATA3 ZBTB1 ZNF513 ZNF335 ARID4B GGPS1 LINC01354 RBM34 MG828730-008 RPL23AP23 lnc-GGPS1-6
GH01J235270 Promoter/Enhancer 1 Ensembl ENCODE 0.4 -25.0 -24990 1 ZNF10 ZBTB17 ZNF184 IRF1 IRF2 ZNF335 PRDM6 ZNF18 ZBTB33 ZEB2 GGPS1 ARID4B lnc-GGPS1-6 RPL23AP23 MIR4753
GH01J235253 Enhancer 1 Ensembl ENCODE 0.3 -41.9 -41884 1.6 CTCF REST NR3C1 RAD21 ATF2 SMC3 MYNN TCF12 ZBTB17 SAP130 GGPS1 ARID4B RPL23AP23 lnc-GGPS1-6 MIR4753
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23AP23 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL23AP23 Gene

Genomic Locations for RPL23AP23 Gene
chr1:235,295,865-235,296,337
(GRCh38/hg38)
Size:
473 bases
Orientation:
Plus strand
chr1:235,459,180-235,459,652
(GRCh37/hg19)
Size:
473 bases
Orientation:
Plus strand

Genomic View for RPL23AP23 Gene

Genes around RPL23AP23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP23 Gene

Proteins for RPL23AP23 Gene

Post-translational modifications for RPL23AP23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP23 Gene

Domains & Families for RPL23AP23 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL23AP23 Gene

Function for RPL23AP23 Gene

Phenotypes From GWAS Catalog for RPL23AP23 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP23 Gene

Localization for RPL23AP23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP23 Gene

Pathways & Interactions for RPL23AP23 Gene

PathCards logo

SuperPathways for RPL23AP23 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPL23AP23 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL23AP23 Gene

Drugs & Compounds for RPL23AP23 Gene

No Compound Related Data Available

Transcripts for RPL23AP23 Gene

mRNA/cDNA for RPL23AP23 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP23 Gene

No ASD Table

Relevant External Links for RPL23AP23 Gene

GeneLoc Exon Structure for
RPL23AP23

Expression for RPL23AP23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23AP23 Gene

genes like me logo Genes that share expression patterns with RPL23AP23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP23 Gene

Orthologs for RPL23AP23 Gene

Evolution for RPL23AP23 Gene

ENSEMBL:
Gene Tree for RPL23AP23 (if available)
TreeFam:
Gene Tree for RPL23AP23 (if available)

No data available for Orthologs for RPL23AP23 Gene

Paralogs for RPL23AP23 Gene

No data available for Paralogs for RPL23AP23 Gene

Variants for RPL23AP23 Gene

Additional Variant Information for RPL23AP23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP23 Gene

Disorders for RPL23AP23 Gene

No disorders were found for RPL23AP23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP23 Gene

Publications for RPL23AP23 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54

No data available for Mastermind for RPL23AP23 Gene

Products for RPL23AP23 Gene

Sources for RPL23AP23 Gene