Aliases for RPL23AP19 Gene

Aliases for RPL23AP19 Gene

  • Ribosomal Protein L23a Pseudogene 19 2 3 5
  • RPL23A_2_8 3
  • RPL23AP19 5

External Ids for RPL23AP19 Gene

Previous GeneCards Identifiers for RPL23AP19 Gene

  • GC01P008801
  • GC01P008893

Summaries for RPL23AP19 Gene

GeneCards Summary for RPL23AP19 Gene

RPL23AP19 (Ribosomal Protein L23a Pseudogene 19) is a Pseudogene.

Additional gene information for RPL23AP19 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL23AP19 Gene

Genomics for RPL23AP19 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL23AP19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J008829 Enhancer 0.7 ENCODE 250.7 -1.2 -1154 0.8 YY1 HOMEZ IRF2 EBF1 BHLHE40 ZBTB48 SPI1 ZEB2 IKZF1 ZNF398 lnc-CA6-4 RPL23AP19 GPR157 ENSG00000221083 HSALNG0000651 RERE HSALNG0000652 SLC45A1
GH01J008831 Enhancer 0.4 Ensembl 250.7 +0.5 494 0.6 NFIC CTCF SMC3 lnc-CA6-4 RPL23AP19 HSALNG0000655 RERE HSALNG0000652 SLC45A1
GH01J008836 Enhancer 0.5 Ensembl ENCODE 0.4 +5.5 5470 1 BCL6B ZNF121 HSALNG0000655 ENO1 RPL23AP19 HSALNG0000652 RERE SLC45A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23AP19 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL23AP19 Gene

Latest Assembly
chr1:8,831,007-8,831,432
(GRCh38/hg38)
Size:
426 bases
Orientation:
Plus strand

Previous Assembly
chr1:8,891,172-8,891,491
(GRCh37/hg19 by Entrez Gene)
Size:
320 bases
Orientation:
Plus strand

chr1:8,891,066-8,891,434
(GRCh37/hg19 by Ensembl)
Size:
369 bases
Orientation:
Plus strand

Genomic View for RPL23AP19 Gene

Genes around RPL23AP19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP19 Gene

Proteins for RPL23AP19 Gene

Post-translational modifications for RPL23AP19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP19 Gene

Domains & Families for RPL23AP19 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL23AP19 Gene

Function for RPL23AP19 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP19 Gene

Localization for RPL23AP19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP19 Gene

Pathways & Interactions for RPL23AP19 Gene

PathCards logo

SuperPathways for RPL23AP19 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL23AP19 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL23AP19 Gene

Drugs & Compounds for RPL23AP19 Gene

No Compound Related Data Available

Transcripts for RPL23AP19 Gene

mRNA/cDNA for RPL23AP19 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP19 Gene

No ASD Table

Relevant External Links for RPL23AP19 Gene

GeneLoc Exon Structure for
RPL23AP19

Expression for RPL23AP19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23AP19 Gene

genes like me logo Genes that share expression patterns with RPL23AP19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP19 Gene

Orthologs for RPL23AP19 Gene

Evolution for RPL23AP19 Gene

ENSEMBL:
Gene Tree for RPL23AP19 (if available)
TreeFam:
Gene Tree for RPL23AP19 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPL23AP19

No data available for Orthologs for RPL23AP19 Gene

Paralogs for RPL23AP19 Gene

No data available for Paralogs for RPL23AP19 Gene

Variants for RPL23AP19 Gene

Additional Variant Information for RPL23AP19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP19
Leiden Open Variation Database (LOVD)
RPL23AP19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP19 Gene

Disorders for RPL23AP19 Gene

No disorders were found for RPL23AP19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP19 Gene

Publications for RPL23AP19 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPL23AP19 Gene

Products for RPL23AP19 Gene

Sources for RPL23AP19 Gene