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Aliases for RPL23AP12 Gene

Aliases for RPL23AP12 Gene

  • Ribosomal Protein L23a Pseudogene 12 2 3 5
  • RPL23A_41_1732 3

External Ids for RPL23AP12 Gene

Previous GeneCards Identifiers for RPL23AP12 Gene

  • GC00U913762
  • GC21U900171
  • GC21P039422
  • GC21P040500

Summaries for RPL23AP12 Gene

GeneCards Summary for RPL23AP12 Gene

RPL23AP12 (Ribosomal Protein L23a Pseudogene 12) is a Pseudogene.

Additional gene information for RPL23AP12 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP12 Gene

Genomics for RPL23AP12 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP12 Gene

Promoters and enhancers for RPL23AP12 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J039124 Enhancer 1.1 Ensembl ENCODE 0.7 -2.1 -2149 2.4 MTA3 CTCF CEBPG GTF2F1 CDC5L MCM2 SP1 EGR1 RAD21 HDGF ERG PSMG1 BRWD1-AS1 RPL23AP12 ENSG00000235888
GH21J039103 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -21.8 -21755 4.8 CEBPG ZSCAN21 BACH1 MCM2 MAFK TRIM24 PRDM1 ZNF384 ZNF680 MTA1 HMGN1 ETS2 BRWD1 RPL23AP12 ENSG00000235888
GH21J039093 Enhancer 1.6 FANTOM5 ENCODE dbSUPER 0.3 -30.9 -30905 6.6 ELF3 CBFA2T2 MLLT1 CEBPG RERE NCOA3 BACH1 MAFK TFE3 TRIM24 ETS2 ENSG00000235888 RPSAP64 HMGN1 LCA5L RPL23AP12
GH21J039077 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -46.0 -46008 8.3 ZNF652 SP1 ELF3 CEBPG MAFK PPARG SP5 PRDM1 ZNF644 EGR1 ETS2 ENSG00000235888 B3GALT5-AS1 RPL23AP12
GH21J039114 Enhancer 0.9 Ensembl ENCODE 0.4 -12.4 -12354 2 SP5 PKNOX1 PRDM10 ZIC2 NFE2 FOS MAFG PBX2 CEBPG CEBPB BRWD1 BRWD1-AS2 BRWD1-AS1 RPL23AP12 ENSG00000235888
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23AP12 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL23AP12 Gene

Genomic Locations for RPL23AP12 Gene
chr21:39,127,555-39,128,076
(GRCh38/hg38)
Size:
522 bases
Orientation:
Plus strand
chr21:40,499,481-40,500,002
(GRCh37/hg19)
Size:
522 bases
Orientation:
Plus strand

Genomic View for RPL23AP12 Gene

Genes around RPL23AP12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP12 Gene

Proteins for RPL23AP12 Gene

Post-translational modifications for RPL23AP12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP12 Gene

Domains & Families for RPL23AP12 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP12 Gene

Function for RPL23AP12 Gene

Phenotypes From GWAS Catalog for RPL23AP12 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP12 Gene

Localization for RPL23AP12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP12 Gene

Pathways & Interactions for RPL23AP12 Gene

PathCards logo

SuperPathways for RPL23AP12 Gene

No Data Available

Interacting Proteins for RPL23AP12 Gene

Gene Ontology (GO) - Biological Process for RPL23AP12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP12 Gene

Drugs & Compounds for RPL23AP12 Gene

No Compound Related Data Available

Transcripts for RPL23AP12 Gene

mRNA/cDNA for RPL23AP12 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP12 Gene

No ASD Table

Relevant External Links for RPL23AP12 Gene

GeneLoc Exon Structure for
RPL23AP12
ECgene alternative splicing isoforms for
RPL23AP12

Expression for RPL23AP12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP12 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP12 Gene:

RPL23AP12
genes like me logo Genes that share expression patterns with RPL23AP12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP12 Gene

Orthologs for RPL23AP12 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL23AP12 Gene

Organism Taxonomy Gene Similarity Type Details
wheat
(Triticum aestivum)
Liliopsida Ta.28707 34
barley
(Hordeum vulgare)
Liliopsida Hv.3242 34
Species where no ortholog for RPL23AP12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPL23AP12 Gene

ENSEMBL:
Gene Tree for RPL23AP12 (if available)
TreeFam:
Gene Tree for RPL23AP12 (if available)

Paralogs for RPL23AP12 Gene

No data available for Paralogs for RPL23AP12 Gene

Variants for RPL23AP12 Gene

Additional Variant Information for RPL23AP12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP12 Gene

Disorders for RPL23AP12 Gene

No disorders were found for RPL23AP12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP12 Gene

Publications for RPL23AP12 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL23AP12 Gene

Sources for RPL23AP12 Gene

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