Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL23AP1 Gene

Aliases for RPL23AP1 Gene

  • Ribosomal Protein L23a Pseudogene 1 2 3 5
  • RPL23A_15_676 3
  • DJ377H14.8 3

External Ids for RPL23AP1 Gene

Previous GeneCards Identifiers for RPL23AP1 Gene

  • GC06U990107
  • GC06M029465
  • GC06M029802
  • GC06M029696
  • GC06M029701
  • GC06M029705
  • GC06M029716
  • GC06M029722
  • GC06M029727
  • GC06M029740
  • GC06M029731
  • GC06M029746
  • GC06M029838
  • GC06M029854
  • GC06M030104
  • GC06M030173
  • GC06M030213
  • GC06M030248

Summaries for RPL23AP1 Gene

GeneCards Summary for RPL23AP1 Gene

RPL23AP1 (Ribosomal Protein L23a Pseudogene 1) is a Pseudogene.

Additional gene information for RPL23AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP1 Gene

Genomics for RPL23AP1 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP1 Gene

Promoters and enhancers for RPL23AP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J029728 Enhancer 0.6 ENCODE dbSUPER 650.7 -1.3 -1267 0.3 NFATC1 MAFG NFE2L2 RPL23AP1 HLA-F HCG4P5 HCG9P5 HLA-F-AS1 GC06M029612
GH06J029747 Promoter/Enhancer 1.5 Ensembl ENCODE 54.6 -21.7 -21727 1.9 PKNOX1 SIN3A DMAP1 GLI4 ZNF48 YY1 GLIS2 ZNF207 FOS ATF7 MICE HCG9P5 HLA-F-AS1 GC06P032274 GC06P031464 ENSG00000199290 RPL23AP1 HCG4P5 HLA-A ZNRD1
GH06J029751 Promoter/Enhancer 1.6 Ensembl ENCODE 38.4 -25.7 -25689 2 PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 CBX5 IFITM4P ENSG00000272236 RPL23AP1 MDC1 HCG4P5 ZNF311 ZNRD1ASP ZFP57 MICE HLA-A
GH06J029757 Enhancer 0.8 ENCODE 45.8 -32.0 -31981 3.3 HDAC1 PKNOX1 TEAD4 TAL1 ZFP64 BACH1 ETS1 TCF12 ZNF316 POLR2A RPL23AP1 ZFP57 HCG4P5 IFITM4P MICE ZNRD1 HCG4 ZNRD1ASP ENSG00000270896 ENSG00000272236
GH06J030324 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 15.2 -599.3 -599274 3.5 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 HCG18 TRIM39 HCG17 MICD GTF2H4 ZNRD1ASP NRM ZNRD1 DHX16 RPL23AP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL23AP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL23AP1 Gene

Genomic Locations for RPL23AP1 Gene
chr6:29,726,632-29,727,154
(GRCh38/hg38)
Size:
523 bases
Orientation:
Minus strand
chr6:29,694,409-29,694,931
(GRCh37/hg19)
Size:
523 bases
Orientation:
Minus strand

Genomic View for RPL23AP1 Gene

Genes around RPL23AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP1 Gene

Function for RPL23AP1 Gene

Molecular function for RPL23AP1 Gene

GENATLAS Biochemistry:
60S ribosomal protein L23A,intronless pseudogene 1

Phenotypes From GWAS Catalog for RPL23AP1 Gene

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP1 Gene

Localization for RPL23AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP1 Gene

Pathways & Interactions for RPL23AP1 Gene

SuperPathways for RPL23AP1 Gene

No Data Available

Interacting Proteins for RPL23AP1 Gene

Gene Ontology (GO) - Biological Process for RPL23AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP1 Gene

Drugs & Compounds for RPL23AP1 Gene

No Compound Related Data Available

Transcripts for RPL23AP1 Gene

mRNA/cDNA for RPL23AP1 Gene

(32) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP1 Gene

No ASD Table

Relevant External Links for RPL23AP1 Gene

GeneLoc Exon Structure for
RPL23AP1
ECgene alternative splicing isoforms for
RPL23AP1

Expression for RPL23AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP1 Gene

mRNA expression in normal human tissues for RPL23AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP1 Gene:

RPL23AP1
genes like me logo Genes that share expression patterns with RPL23AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP1 Gene

Orthologs for RPL23AP1 Gene

Evolution for RPL23AP1 Gene

ENSEMBL:
Gene Tree for RPL23AP1 (if available)
TreeFam:
Gene Tree for RPL23AP1 (if available)

No data available for Orthologs for RPL23AP1 Gene

Paralogs for RPL23AP1 Gene

No data available for Paralogs for RPL23AP1 Gene

Variants for RPL23AP1 Gene

Additional Variant Information for RPL23AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP1 Gene

Disorders for RPL23AP1 Gene

Additional Disease Information for RPL23AP1

Genetic Association Database
(GAD)

No disorders were found for RPL23AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP1 Gene

Publications for RPL23AP1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Identification of seven new human MHC class I region genes around the HLA-F locus. (PMID: 8662070) Fan W … Weissman SM (Immunogenetics 1996) 2 3 58
  3. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S … Sun J (Carcinogenesis 2012) 44 58
  4. Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with Behçet's disease. (PMID: 20622878) Remmers EF … Gül A (Nature genetics 2010) 44 58
  5. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. (PMID: 19525953) De Jager PL … Oksenberg JR (Nature genetics 2009) 44 58

Products for RPL23AP1 Gene

Sources for RPL23AP1 Gene

Content
Loading form....