Aliases for RPL21P78 Gene

Aliases for RPL21P78 Gene

  • Ribosomal Protein L21 Pseudogene 78 2 3
  • Ribosomal Protein L21 (RPL21) Pseudogene 5
  • RPL21_30_950 3
  • AF305872.1 5

External Ids for RPL21P78 Gene

Previous GeneCards Identifiers for RPL21P78 Gene

  • GC08U901135
  • GC08M134015

Summaries for RPL21P78 Gene

GeneCards Summary for RPL21P78 Gene

RPL21P78 (Ribosomal Protein L21 Pseudogene 78) is a Pseudogene.

Additional gene information for RPL21P78 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL21P78 Gene

Genomics for RPL21P78 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL21P78 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J133000 Enhancer 0.9 Ensembl ENCODE 6.9 +2.1 2115 2.4 CEBPG CREB1 ATF7 SP1 JUND CTBP1 ATF3 NR3C1 CEBPB JUN RPL21P78 lnc-SLA-1 NONHSAG051323.2 SLA TG
GH08J132976 Enhancer 0.9 FANTOM5 Ensembl ENCODE 4.7 +23.1 23114 6.8 ZIC2 NFIC SPI1 NFIB ATF7 LCORL NR3C1 MAFK CTCF SLA TG RPL21P78 NONHSAG051323.2 lnc-SLA-1
GH08J132994 Enhancer 0.7 Ensembl ENCODE 6.2 +6.9 6914 5.6 ZIC2 NFE2 MAFG POLR2A SPI1 SMARCA4 EGR2 MZF1 RPL21P78 lnc-SLA-1 NONHSAG051323.2 SLA TG
GH08J133007 Enhancer 0.3 ENCODE 0.7 -3.2 -3236 0.2 BCL6 ZNF3 RPL21P78 LOC105375768 SLA TG
GH08J133006 Enhancer 0.3 ENCODE 0.7 -3.5 -3481 0 ZNF3 RPL21P78 LOC105375768 SLA TG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL21P78 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL21P78 Gene

Genomic Locations for RPL21P78 Gene
chr8:133,002,577-133,003,115
(GRCh38/hg38)
Size:
539 bases
Orientation:
Minus strand
chr8:134,014,822-134,015,360
(GRCh37/hg19)
Size:
539 bases
Orientation:
Minus strand

Genomic View for RPL21P78 Gene

Genes around RPL21P78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21P78 Gene

Proteins for RPL21P78 Gene

Post-translational modifications for RPL21P78 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P78 Gene

Domains & Families for RPL21P78 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL21P78 Gene

Function for RPL21P78 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P78 Gene

Localization for RPL21P78 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL21P78 Gene

Pathways & Interactions for RPL21P78 Gene

PathCards logo

SuperPathways for RPL21P78 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL21P78 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL21P78 Gene

Drugs & Compounds for RPL21P78 Gene

No Compound Related Data Available

Transcripts for RPL21P78 Gene

mRNA/cDNA for RPL21P78 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P78 Gene

No ASD Table

Relevant External Links for RPL21P78 Gene

GeneLoc Exon Structure for
RPL21P78

Expression for RPL21P78 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL21P78 Gene

mRNA differential expression in normal tissues according to GTEx for RPL21P78 Gene

This gene is overexpressed in Thyroid (x52.4).
genes like me logo Genes that share expression patterns with RPL21P78: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P78 Gene

Orthologs for RPL21P78 Gene

Evolution for RPL21P78 Gene

ENSEMBL:
Gene Tree for RPL21P78 (if available)
TreeFam:
Gene Tree for RPL21P78 (if available)

No data available for Orthologs for RPL21P78 Gene

Paralogs for RPL21P78 Gene

No data available for Paralogs for RPL21P78 Gene

Variants for RPL21P78 Gene

Additional Variant Information for RPL21P78 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL21P78 Gene

Disorders for RPL21P78 Gene

No disorders were found for RPL21P78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL21P78 Gene

Publications for RPL21P78 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPL21P78 Gene

Products for RPL21P78 Gene

Sources for RPL21P78 Gene