Aliases for RPL21P28 Gene

Aliases for RPL21P28 Gene

  • Ribosomal Protein L21 Pseudogene 28 2 3 5
  • RPL21_8_160 3
  • RPL21P28 5

External Ids for RPL21P28 Gene

Previous GeneCards Identifiers for RPL21P28 Gene

  • GC01M210294
  • GC01M212225
  • GC01M182901

Summaries for RPL21P28 Gene

GeneCards Summary for RPL21P28 Gene

RPL21P28 (Ribosomal Protein L21 Pseudogene 28) is a Pseudogene.

Additional gene information for RPL21P28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL21P28 Gene

Genomics for RPL21P28 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL21P28 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL21P28 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the RPL21P28 gene promoter:
  • AML1a
  • AREB6
  • ARP-1
  • ATF6
  • GATA-6
  • Hlf
  • Pax-2
  • Pax-2a
  • TBP

Genomic Locations for RPL21P28 Gene

Genomic Locations for RPL21P28 Gene
chr1:212,051,486-212,052,051
(GRCh38/hg38)
Size:
566 bases
Orientation:
Minus strand
chr1:212,224,828-212,225,393
(GRCh37/hg19)
Size:
566 bases
Orientation:
Minus strand

Genomic View for RPL21P28 Gene

Genes around RPL21P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21P28 Gene

Proteins for RPL21P28 Gene

Post-translational modifications for RPL21P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P28 Gene

Domains & Families for RPL21P28 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL21P28 Gene

Function for RPL21P28 Gene

Phenotypes From GWAS Catalog for RPL21P28 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P28 Gene

Localization for RPL21P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL21P28 Gene

Pathways & Interactions for RPL21P28 Gene

PathCards logo

SuperPathways for RPL21P28 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL21P28 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL21P28 Gene

Drugs & Compounds for RPL21P28 Gene

No Compound Related Data Available

Transcripts for RPL21P28 Gene

mRNA/cDNA for RPL21P28 Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P28 Gene

No ASD Table

Relevant External Links for RPL21P28 Gene

GeneLoc Exon Structure for
RPL21P28

Expression for RPL21P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL21P28 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPL21P28

SOURCE GeneReport for Unigene cluster for RPL21P28 Gene:

Hs.126774
genes like me logo Genes that share expression patterns with RPL21P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P28 Gene

Orthologs for RPL21P28 Gene

Evolution for RPL21P28 Gene

ENSEMBL:
Gene Tree for RPL21P28 (if available)
TreeFam:
Gene Tree for RPL21P28 (if available)

No data available for Orthologs for RPL21P28 Gene

Paralogs for RPL21P28 Gene

No data available for Paralogs for RPL21P28 Gene

Variants for RPL21P28 Gene

Structural Variations from Database of Genomic Variants (DGV) for RPL21P28 Gene

Variant ID Type Subtype PubMed ID
nsv4432 CNV insertion 18451855
nsv506979 OTHER sequence alteration 20534489
nsv945281 CNV duplication 23825009

Additional Variant Information for RPL21P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPL21P28 Gene

Disorders for RPL21P28 Gene

Additional Disease Information for RPL21P28

No disorders were found for RPL21P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL21P28 Gene

Publications for RPL21P28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris JM … Hakonarson H (The New England journal of medicine 2008) 41
  3. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 41
  4. Genome-wide association of sleep and circadian phenotypes. (PMID: 17903308) Gottlieb DJ … Wilk JB (BMC medical genetics 2007) 41

Products for RPL21P28 Gene

Sources for RPL21P28 Gene