Aliases for RPL21P23 Gene

Aliases for RPL21P23 Gene

  • Ribosomal Protein L21 Pseudogene 23 2 3 5
  • RPL21_2_54 3
  • RPL21P23 5

External Ids for RPL21P23 Gene

Previous GeneCards Identifiers for RPL21P23 Gene

  • GC01U902292
  • GC01P057005

Summaries for RPL21P23 Gene

GeneCards Summary for RPL21P23 Gene

RPL21P23 (Ribosomal Protein L21 Pseudogene 23) is a Pseudogene.

Additional gene information for RPL21P23 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL21P23 Gene

Genomics for RPL21P23 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL21P23 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J056532 Enhancer 1.1 ENCODE dbSUPER 0.7 -3.1 -3116 5.7 POLR2A BCL11A HOMEZ SIN3A FOXA2 SMAD4 SAP130 IRF4 RARA YY1 RPL21P23 ENSG00000284686 PLPP3
GH01J056525 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -11.4 -11435 3.2 BCLAF1 JUND ATF2 ZIC2 BCL11A CTCF TRIM22 BHLHE40 FEZF1 ZNF341 ENSG00000284686 RPL21P23 PLPP3
GH01J056538 Enhancer 0.7 dbSUPER 0.7 +2.3 2309 4.3 YY1 FEZF1 HOMEZ FOXA2 SMAD4 SAP130 RARA FOXP1 BCL6 SOX5 RPL21P23 lnc-PRKAA2-9 ENSG00000284686 lnc-FYB2-4 RPL23AP85 PLPP3
GH01J056529 Enhancer 0.4 dbSUPER 0.4 -7.9 -7892 1.6 NFIA PPARG POLR2A ENSG00000284686 RPL21P23 PLPP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL21P23 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL21P23 Gene

Latest Assembly
chr1:56,538,412-56,538,957
(GRCh38/hg38)
Size:
546 bases
Orientation:
Plus strand

Previous Assembly
chr1:57,004,084-57,004,629
(GRCh37/hg19 by Entrez Gene)
Size:
546 bases
Orientation:
Plus strand

chr1:57,004,124-57,004,583
(GRCh37/hg19 by Ensembl)
Size:
460 bases
Orientation:
Plus strand

Genomic View for RPL21P23 Gene

Genes around RPL21P23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21P23 Gene

Proteins for RPL21P23 Gene

Post-translational modifications for RPL21P23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P23 Gene

Domains & Families for RPL21P23 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL21P23 Gene

Function for RPL21P23 Gene

Phenotypes From GWAS Catalog for RPL21P23 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P23 Gene

Localization for RPL21P23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL21P23 Gene

Pathways & Interactions for RPL21P23 Gene

PathCards logo

SuperPathways for RPL21P23 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL21P23 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL21P23 Gene

Drugs & Compounds for RPL21P23 Gene

No Compound Related Data Available

Transcripts for RPL21P23 Gene

mRNA/cDNA for RPL21P23 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P23 Gene

No ASD Table

Relevant External Links for RPL21P23 Gene

GeneLoc Exon Structure for
RPL21P23

Expression for RPL21P23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL21P23 Gene

mRNA differential expression in normal tissues according to GTEx for RPL21P23 Gene

This gene is overexpressed in Cervix - Ectocervix (x4.1).
genes like me logo Genes that share expression patterns with RPL21P23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P23 Gene

Orthologs for RPL21P23 Gene

Evolution for RPL21P23 Gene

ENSEMBL:
Gene Tree for RPL21P23 (if available)
TreeFam:
Gene Tree for RPL21P23 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPL21P23

No data available for Orthologs for RPL21P23 Gene

Paralogs for RPL21P23 Gene

No data available for Paralogs for RPL21P23 Gene

Variants for RPL21P23 Gene

Additional Variant Information for RPL21P23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P23
Leiden Open Variation Database (LOVD)
RPL21P23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL21P23 Gene

Disorders for RPL21P23 Gene

No disorders were found for RPL21P23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL21P23 Gene

Publications for RPL21P23 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPL21P23 Gene

Products for RPL21P23 Gene

Sources for RPL21P23 Gene