RPL21P126 Gene (Pseudogene)

Ribosomal Protein L21 Pseudogene 126

GC18P055635
GIFtS:
8
See more...

Aliases for RPL21P126 Gene

Aliases for RPL21P126 Gene

  • Ribosomal Protein L21 Pseudogene 126 2 3 5
  • RPL21_59_1605 3
  • RPL21P126 5

External Ids for RPL21P126 Gene

Previous GeneCards Identifiers for RPL21P126 Gene

  • GC18U900487
  • GC18P053304

Summaries for RPL21P126 Gene

GeneCards Summary for RPL21P126 Gene

RPL21P126 (Ribosomal Protein L21 Pseudogene 126) is a Pseudogene.

Additional gene information for RPL21P126 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL21P126 Gene

Genomics for RPL21P126 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPL21P126 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J055634 Enhancer 0.6 Ensembl ENCODE 600.7 -0.9 -893 1 CEBPB FOS CEBPG NONHSAG023912.2 RPL21P126 TCF4 lnc-RAB27B-9 ENSG00000267284 CCDC68
GH18J055635 Promoter 0.3 EPDnew 600.7 +0.2 180 0.1 NONHSAG023912.2 RPL21P126 TCF4 ENSG00000267284 CCDC68
GH18J055581 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 -50.0 -50009 9.6 TEAD4 PRDM10 REST ZNF629 IKZF1 ZNF692 POLR2A JUND PRDM1 MTA2 TCF4 5MWI_A-081 RPL21P126 LINC01929 LINC01415 ENSG00000267284 LOC105372126 lnc-CCDC68-2 CCDC68
GH18J055731 Enhancer 1.1 Ensembl ENCODE 11.4 +96.7 96707 1.8 LEF1 IKZF1 JUND MTA1 REST DPF2 HDAC1 SOX6 FOXJ2 TCF12 TCF4 RPL21P126 piR-45012-253 piR-50437-312 LOC105372130 ENSG00000267284 WDR7
GH18J055592 Enhancer 0.8 ENCODE 11.8 -42.9 -42929 0.2 IKZF1 JUND MTA2 PKNOX1 ZNF24 DPF2 HDAC1 SOX6 FOXJ2 EP300 RPL21P126 TCF4 ENSG00000267284 LOC105372126 lnc-RAB27B-9 CCDC68
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL21P126 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL21P126 Gene

Genomic Locations for RPL21P126 Gene
chr18:55,635,794-55,636,346
(GRCh38/hg38)
Size:
553 bases
Orientation:
Plus strand
chr18:53,303,025-53,303,577
(GRCh37/hg19)
Size:
553 bases
Orientation:
Plus strand

Genomic View for RPL21P126 Gene

Genes around RPL21P126 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P126 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P126 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL21P126 Gene

Proteins for RPL21P126 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL21P126 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P126 Gene

Domains & Families for RPL21P126 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL21P126 Gene

Function for RPL21P126 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPL21P126 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P126 Gene

Localization for RPL21P126 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL21P126 Gene

Pathways & Interactions for RPL21P126 Gene

PathCards logo

SuperPathways for RPL21P126 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL21P126 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL21P126 Gene

Drugs & Compounds for RPL21P126 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL21P126 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPL21P126 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P126 Gene

No ASD Table

Relevant External Links for RPL21P126 Gene

GeneLoc Exon Structure for
RPL21P126

Expression for RPL21P126 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL21P126 Gene

mRNA expression in normal human tissues for RPL21P126 Gene
mRNA expression by GTEx for RPL21P126 Gene

mRNA differential expression in normal tissues according to GTEx for RPL21P126 Gene

This gene is overexpressed in Testis (x49.4).
genes like me logo Genes that share expression patterns with RPL21P126: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P126 Gene

Orthologs for RPL21P126 Gene

Evolution for RPL21P126 Gene

ENSEMBL:
Gene Tree for RPL21P126 (if available)
TreeFam:
Gene Tree for RPL21P126 (if available)

No data available for Orthologs for RPL21P126 Gene

Paralogs for RPL21P126 Gene

No data available for Paralogs for RPL21P126 Gene

Variants for RPL21P126 Gene

Additional Variant Information for RPL21P126 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P126

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL21P126 Gene

Disorders for RPL21P126 Gene

Additional Disease Information for RPL21P126

Genetic Association Database
(GAD)

No disorders were found for RPL21P126 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL21P126 Gene

Publications for RPL21P126 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population. (PMID: 21160409) Petrovski S … Center for HIV/AIDS Vaccine Immunology (AIDS (London, England) 2011) 41
  3. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 41
  4. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C … Cox NJ (American journal of human genetics 2000) 41

No data available for Mastermind for RPL21P126 Gene

Products for RPL21P126 Gene

Sources for RPL21P126 Gene