RPL21P119 Gene (Pseudogene)

Ribosomal Protein L21 Pseudogene 119

GC16M009175
GIFtS:
9
See more...

Aliases for RPL21P119 Gene

Aliases for RPL21P119 Gene

  • Ribosomal Protein L21 Pseudogene 119 2 3 5
  • RPL21_56_1471 3
  • RPL21P119 5

External Ids for RPL21P119 Gene

Previous GeneCards Identifiers for RPL21P119 Gene

  • GC16M009160
  • GC16M009161
  • GC16M009251
  • GC16M009162
  • GC16M009163
  • GC16M009169

Summaries for RPL21P119 Gene

GeneCards Summary for RPL21P119 Gene

RPL21P119 (Ribosomal Protein L21 Pseudogene 119) is a Pseudogene.

Additional gene information for RPL21P119 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL21P119 Gene

Genomics for RPL21P119 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPL21P119 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J009157 Enhancer 0.4 Ensembl 600.7 -0.6 -580 0.2 SCRT1 KLF17 KLF1 RF00017-1957 RPL21P119 piR-31108-006 piR-61687-013 piR-48218-014 piR-60898-011 piR-43105-222 C16orf72
GH16J009154 Enhancer 0.2 Ensembl 600.7 +1.6 1568 1.8 RF00017-1957 RPL21P119 piR-31108-006 piR-61687-013 piR-48218-014 piR-60898-011 HSALNG0109459 C16orf72
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL21P119 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL21P119 Gene

Genomic Locations for RPL21P119 Gene
chr16:9,156,342-9,156,921
(GRCh38/hg38)
Size:
580 bases
Orientation:
Minus strand
chr16:9,250,199-9,250,778
(GRCh37/hg19)
Size:
580 bases
Orientation:
Minus strand

Genomic View for RPL21P119 Gene

Genes around RPL21P119 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P119 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P119 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL21P119 Gene

Proteins for RPL21P119 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Protein Expression for RPL21P119 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for RPL21P119 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P119 Gene

Domains & Families for RPL21P119 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL21P119 Gene

Function for RPL21P119 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPL21P119 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P119 Gene

Localization for RPL21P119 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL21P119 Gene

Pathways & Interactions for RPL21P119 Gene

PathCards logo

SuperPathways for RPL21P119 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL21P119 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL21P119 Gene

Drugs & Compounds for RPL21P119 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL21P119 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPL21P119 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P119 Gene

No ASD Table

Relevant External Links for RPL21P119 Gene

GeneLoc Exon Structure for
RPL21P119

Expression for RPL21P119 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL21P119 Gene

mRNA expression in normal human tissues for RPL21P119 Gene
mRNA expression by GTEx for RPL21P119 Gene

mRNA differential expression in normal tissues according to GTEx for RPL21P119 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.2).

Protein differential expression in normal tissues from HIPED for RPL21P119 Gene

This gene is overexpressed in Heart (61.8) and Brain (7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPL21P119 Gene



Protein tissue co-expression partners for RPL21P119 Gene

- Elite partner
genes like me logo Genes that share expression patterns with RPL21P119: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P119 Gene

Orthologs for RPL21P119 Gene

Evolution for RPL21P119 Gene

ENSEMBL:
Gene Tree for RPL21P119 (if available)
TreeFam:
Gene Tree for RPL21P119 (if available)

No data available for Orthologs for RPL21P119 Gene

Paralogs for RPL21P119 Gene

No data available for Paralogs for RPL21P119 Gene

Variants for RPL21P119 Gene

Additional Variant Information for RPL21P119 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P119

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL21P119 Gene

Disorders for RPL21P119 Gene

Additional Disease Information for RPL21P119

Genetic Association Database
(GAD)

No disorders were found for RPL21P119 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL21P119 Gene

Publications for RPL21P119 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  3. A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order. (PMID: 22036096) Ramasamy A … Jarvis DL (The Journal of allergy and clinical immunology 2011) 41
  4. GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease. (PMID: 21658281) Aouizerat BE … Tseng ZH (BMC cardiovascular disorders 2011) 41
  5. Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure. (PMID: 22174851) Lingappa JR … Partners in Prevention HSV/HIV Transmission Study Team (PloS one 2011) 41

ExternalLinks

View latest publications for RPL21P119 gene in Mastermind

Products for RPL21P119 Gene

Sources for RPL21P119 Gene