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Aliases for RPL19 Gene

Aliases for RPL19 Gene

  • Ribosomal Protein L19 2 3 5
  • Large Ribosomal Subunit Protein EL19 3 4
  • 60S Ribosomal Protein L19 2 3
  • Ribosomal Protein L19, Cytosolic, N-Terminus Truncated 2
  • L19 3

External Ids for RPL19 Gene

Previous GeneCards Identifiers for RPL19 Gene

  • GC17P036860
  • GC17P039354
  • GC17P037266
  • GC17P037731
  • GC17P034610
  • GC17P037356

Summaries for RPL19 Gene

Entrez Gene Summary for RPL19 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L19E family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL19 Gene

RPL19 (Ribosomal Protein L19) is a Protein Coding gene. Among its related pathways are Viral mRNA Translation and Influenza Viral RNA Transcription and Replication. Gene Ontology (GO) annotations related to this gene include structural constituent of ribosome.

Gene Wiki entry for RPL19 Gene

Additional gene information for RPL19 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL19 Gene

Genomics for RPL19 Gene

GeneHancer (GH) Regulatory Elements for RPL19 Gene

Promoters and enhancers for RPL19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J039191 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 669.8 -3.3 -3285 11.7 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 RPL19 CACNB1 CDK12 SNORA21 MED1 STARD3 RPL23 LOC105371762 MSL1 FBXL20
GH17J038745 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 28.5 -450.5 -450510 8.6 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 PCGF2 PSMB3 LOC100287808 CDK12 MED1 LOC105371762 SNORA21 RPL19 RPL23 STARD3
GH17J040102 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 29.6 +909.2 909183 13.3 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 NR1D1 CDK12 MED1 MSL1 SMARCE1 RARA RPL19 MED24 SNORD124 STARD3
GH17J040061 Promoter/Enhancer 3 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 20 +869.0 869012 14.8 CLOCK MLX ZFP64 FEZF1 YY1 SLC30A9 ZNF143 SP3 PPARGC1A MEF2D THRA GC17P040067 MED1 SMARCE1 CDK12 MED24 MSL1 GSDMA RPL19 RARA
GH17J040138 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 27.3 +940.1 940056 3.2 ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 MCM3 CASC3 GC17M040140 MED1 CDK12 SMARCE1 SNORD124 MED24 MSL1 STARD3 RPL19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL19 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL19 gene promoter:
  • c-Myc
  • MRF-2
  • Max
  • POU2F1
  • c-Myb
  • POU2F1a
  • GATA-3
  • p300
  • SRF (504 AA)

Genomic Locations for RPL19 Gene

Genomic Locations for RPL19 Gene
chr17:39,200,283-39,204,727
(GRCh38/hg38)
Size:
4,445 bases
Orientation:
Plus strand
chr17:37,356,536-37,360,980
(GRCh37/hg19)
Size:
4,445 bases
Orientation:
Plus strand

Genomic View for RPL19 Gene

Genes around RPL19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL19 Gene

Proteins for RPL19 Gene

  • Protein details for RPL19 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P84098-RL19_HUMAN
    Recommended name:
    60S ribosomal protein L19
    Protein Accession:
    P84098
    Secondary Accessions:
    • B2R4K2
    • P14118
    • P22908
    • Q502Y6
    • Q7Z6E4

    Protein attributes for RPL19 Gene

    Size:
    196 amino acids
    Molecular mass:
    23466 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD97677.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RPL19 Gene

neXtProt entry for RPL19 Gene

Post-translational modifications for RPL19 Gene

  • Citrullinated by PADI4.
  • Ubiquitination at posLast=181181, Lys180, Lys153, posLast=128128, posLast=9292, Lys46, and posLast=2121
  • Modification sites at PhosphoSitePlus

Other Protein References for RPL19 Gene

No data available for DME Specific Peptides for RPL19 Gene

Domains & Families for RPL19 Gene

Gene Families for RPL19 Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins
  • Ribosomal proteins

Suggested Antigen Peptide Sequences for RPL19 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P84098

UniProtKB/Swiss-Prot:

RL19_HUMAN :
  • Belongs to the eukaryotic ribosomal protein eL19 family.
Family:
  • Belongs to the eukaryotic ribosomal protein eL19 family.
genes like me logo Genes that share domains with RPL19: view

Function for RPL19 Gene

Molecular function for RPL19 Gene

GENATLAS Biochemistry:
60S ribosomal protein L19,23kDa

Phenotypes From GWAS Catalog for RPL19 Gene

Gene Ontology (GO) - Molecular Function for RPL19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS 1577483
GO:0003735 structural constituent of ribosome IEA,TAS 1577483
GO:0005515 protein binding IPI 21044950
GO:0070180 large ribosomal subunit rRNA binding IEA --
GO:1990932 5.8S rRNA binding IEA --
genes like me logo Genes that share ontologies with RPL19: view
genes like me logo Genes that share phenotypes with RPL19: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for RPL19

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL19 Gene

Localization for RPL19 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPL19 gene
Compartment Confidence
cytosol 5
nucleus 2
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (3)
  • Endoplasmic reticulum (3)
  • Nucleoli (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for RPL19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005829 cytosol TAS --
GO:0005840 ribosome IEA --
GO:0005925 focal adhesion HDA 21423176
GO:0016020 membrane HDA 19946888
genes like me logo Genes that share ontologies with RPL19: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPL19 Gene

Pathways & Interactions for RPL19 Gene

genes like me logo Genes that share pathways with RPL19: view

Pathways by source for RPL19 Gene

1 KEGG pathway for RPL19 Gene
1 GeneGo (Thomson Reuters) pathway for RPL19 Gene

Gene Ontology (GO) - Biological Process for RPL19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0002181 cytoplasmic translation IDA 25957688
GO:0006364 rRNA processing TAS --
GO:0006412 translation IEA,TAS 1577483
GO:0006413 translational initiation TAS --
genes like me logo Genes that share ontologies with RPL19: view

No data available for SIGNOR curated interactions for RPL19 Gene

Drugs & Compounds for RPL19 Gene

(4) Drugs for RPL19 Gene - From: DrugBank and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Alpha-Hydroxy-Beta-Phenyl-Propionic Acid Experimental Pharma Target 0
Anisomycin Experimental Pharma Target JNK agonist, potent and specific, JNK, SAPK and p38 activator 0
puromycin Experimental Pharma Target 0

(1) Additional Compounds for RPL19 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RPL19: view

Transcripts for RPL19 Gene

mRNA/cDNA for RPL19 Gene

Unigene Clusters for RPL19 Gene

Ribosomal protein L19:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for RPL19

Alternative Splicing Database (ASD) splice patterns (SP) for RPL19 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6
SP1:
SP2: -
SP3:

Relevant External Links for RPL19 Gene

GeneLoc Exon Structure for
RPL19
ECgene alternative splicing isoforms for
RPL19

Expression for RPL19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL19 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RPL19 Gene

This gene is overexpressed in Nasal epithelium (7.5) and Tlymphocyte (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for RPL19 Gene



Protein tissue co-expression partners for RPL19 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL19 Gene:

RPL19

SOURCE GeneReport for Unigene cluster for RPL19 Gene:

Hs.381061

Evidence on tissue expression from TISSUES for RPL19 Gene

  • Nervous system(5)
  • Intestine(4.8)
  • Liver(4.8)
  • Muscle(4.8)
  • Lung(4.3)
  • Skin(3.9)
  • Pancreas(3.7)
  • Eye(3.6)
  • Kidney(3.3)
  • Blood(3.1)
  • Stomach(3.1)
  • Heart(2.9)
  • Lymph node(2.7)
  • Bone(2.6)
  • Bone marrow(2.6)
  • Spleen(2.6)
  • Thyroid gland(2.5)
  • Adrenal gland(2.4)
  • Gall bladder(2.4)
genes like me logo Genes that share expression patterns with RPL19: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL19 Gene

Orthologs for RPL19 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL19 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia RPL19 34
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RPL19 34 33
  • 99.83 (n)
OneToOne
cow
(Bos Taurus)
Mammalia RPL19 34 33
  • 93.37 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Rpl19 16 34 33
  • 92.01 (n)
dog
(Canis familiaris)
Mammalia RPL19 34 33
  • 92.01 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rpl19 33
  • 90.99 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RPL19 34
  • 65 (a)
OneToOne
chicken
(Gallus gallus)
Aves RPL19 34 33
  • 84.18 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPL19 34
  • 100 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl19 33
  • 81.29 (n)
zebrafish
(Danio rerio)
Actinopterygii rpl19 34 33
  • 78.06 (n)
OneToOne
Dr.29055 33
fruit fly
(Drosophila melanogaster)
Insecta RpL19 34 35 33
  • 70.47 (n)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004422 33
  • 68.73 (n)
worm
(Caenorhabditis elegans)
Secernentea rpl-19 34 35 33
  • 62.2 (n)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL19A 34
  • 57 (a)
OneToMany
RPL19B 36 34 33
  • 54.3 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER179C 33
  • 55.91 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E12453g 33
  • 54.3 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G02230 33
  • 63.84 (n)
soybean
(Glycine max)
eudicotyledons Gma.10683 33
rice
(Oryza sativa)
Liliopsida Os03g0337800 33
  • 63.4 (n)
barley
(Hordeum vulgare)
Liliopsida Hv.3248 33
wheat
(Triticum aestivum)
Liliopsida Ta.2739 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5596 34
  • 71 (a)
OneToOne
bread mold
(Neurospora crassa)
Ascomycetes NCU05804 33
  • 62.67 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl1902 33
  • 56.48 (n)
Species where no ortholog for RPL19 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for RPL19 Gene

ENSEMBL:
Gene Tree for RPL19 (if available)
TreeFam:
Gene Tree for RPL19 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for RPL19: view image

Paralogs for RPL19 Gene

No data available for Paralogs for RPL19 Gene

Variants for RPL19 Gene

Sequence variations from dbSNP and Humsavar for RPL19 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000091001 -- 39,202,650(+) C/T intron_variant
rs1000112331 -- 39,198,512(+) C/T upstream_transcript_variant
rs1000540149 -- 39,204,397(+) T/G intron_variant
rs1001012521 -- 39,200,084(+) A/C upstream_transcript_variant
rs1001497477 -- 39,204,055(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL19 Gene

Variant ID Type Subtype PubMed ID
nsv1146669 OTHER inversion 26484159
nsv833440 CNV loss 17160897
nsv833441 CNV loss 17160897
nsv960100 CNV duplication 23825009

Variation tolerance for RPL19 Gene

Residual Variation Intolerance Score: 58.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.03; 0.78% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RPL19 Gene

Human Gene Mutation Database (HGMD)
RPL19
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL19

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL19 Gene

Disorders for RPL19 Gene

Additional Disease Information for RPL19

No disorders were found for RPL19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL19 Gene

Publications for RPL19 Gene

  1. High-level expression of the ribosomal protein L19 in human breast tumors that overexpress erbB-2. (PMID: 8095182) Henry JL … King CR (Cancer research 1993) 3 4 22 58
  2. Human cDNAs encoding elongation factor 1 gamma and the ribosomal protein L19. (PMID: 1598220) Kumabe T … Yamamoto T (Nucleic acids research 1992) 3 4 22 58
  3. Identification of ribosomal protein L19 as a novel tumor antigen recognized by autologous cytotoxic T lymphocytes in lung adenocarcinoma. (PMID: 19799608) Kuroda K … Yasumoto K (Cancer science 2010) 3 22 58
  4. Ribosomal protein l19 is a prognostic marker for human prostate cancer. (PMID: 16609016) Bee A … Foster CS (Clinical cancer research : an official journal of the American Association for Cancer Research 2006) 3 22 58
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58

Products for RPL19 Gene

Sources for RPL19 Gene