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Aliases for RPL17P9 Gene

Aliases for RPL17P9 Gene

  • Ribosomal Protein L17 Pseudogene 9 2 3
  • RPL17_1_25 3
  • AL513365.1 5

External Ids for RPL17P9 Gene

Previous GeneCards Identifiers for RPL17P9 Gene

  • GC01M026655
  • GC01M026782

Summaries for RPL17P9 Gene

GeneCards Summary for RPL17P9 Gene

RPL17P9 (Ribosomal Protein L17 Pseudogene 9) is a Pseudogene.

Additional gene information for RPL17P9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P9 Gene

Genomics for RPL17P9 Gene

GeneHancer (GH) Regulatory Elements for RPL17P9 Gene

Promoters and enhancers for RPL17P9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I026691 Promoter/Enhancer 3.3 UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 20.9 -241.8 -241798 12.9 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ARID1A LOC101928728 HMGN2 ACTG1P20 PIGV LOC101928324 GPN2 GPATCH3 TMEM222 RPL17P9
GH01I026618 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 30 -165.1 -165136 4 CLOCK FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 ARID1A HMGN2 ACTG1P20 GPN2 ZNF593 GPATCH3 AHDC1 RPL17P9 LOC101928324 NPM1P39
GH01I025858 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 20.9 +594.7 594691 4.6 CLOCK YBX1 YY1 ZNF213 ZNF416 ZNF143 SP3 MEF2D SSRP1 ZNF610 AUNIP ENSG00000236528 ARID1A HMGN2 MTFR1L ENSG00000261349 SELENON LOC101928324 RPL17P9 ZNF593
GH01I026782 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 20.5 -331.9 -331886 9.2 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ZC3H11A PIGV ARID1A HMGN2 ACTG1P20 GPN2 LOC101928324 ENSG00000231344 GPATCH3 RPL17P9 FAM76A
GH01I025995 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 19.8 +457.3 457307 4.4 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 PAFAH2 ARID1A HMGN2 LOC101928324 ENSG00000261349 SYF2 GPN2 ZNF593 LOC101928728 RPL17P9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17P9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P9 Gene

Genomic Locations for RPL17P9 Gene
chr1:26,454,599-26,455,260
(GRCh38/hg38)
Size:
662 bases
Orientation:
Minus strand
chr1:26,781,090-26,781,751
(GRCh37/hg19)

Genomic View for RPL17P9 Gene

Genes around RPL17P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P9 Gene

Proteins for RPL17P9 Gene

Post-translational modifications for RPL17P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P9 Gene

Domains & Families for RPL17P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P9 Gene

Function for RPL17P9 Gene

Phenotypes From GWAS Catalog for RPL17P9 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P9 Gene

Localization for RPL17P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P9 Gene

Pathways & Interactions for RPL17P9 Gene

SuperPathways for RPL17P9 Gene

No Data Available

Interacting Proteins for RPL17P9 Gene

Gene Ontology (GO) - Biological Process for RPL17P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P9 Gene

Drugs & Compounds for RPL17P9 Gene

No Compound Related Data Available

Transcripts for RPL17P9 Gene

mRNA/cDNA for RPL17P9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P9 Gene

No ASD Table

Relevant External Links for RPL17P9 Gene

GeneLoc Exon Structure for
RPL17P9
ECgene alternative splicing isoforms for
RPL17P9

Expression for RPL17P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P9 Gene

Protein differential expression in normal tissues from HIPED for RPL17P9 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPL17P9 Gene



Protein tissue co-expression partners for RPL17P9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL17P9 Gene:

RPL17P9
genes like me logo Genes that share expression patterns with RPL17P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P9 Gene

Orthologs for RPL17P9 Gene

Evolution for RPL17P9 Gene

ENSEMBL:
Gene Tree for RPL17P9 (if available)
TreeFam:
Gene Tree for RPL17P9 (if available)

No data available for Orthologs for RPL17P9 Gene

Paralogs for RPL17P9 Gene

No data available for Paralogs for RPL17P9 Gene

Variants for RPL17P9 Gene

Additional Variant Information for RPL17P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P9 Gene

Disorders for RPL17P9 Gene

No disorders were found for RPL17P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P9 Gene

Publications for RPL17P9 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL17P9 Gene

Sources for RPL17P9 Gene

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