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RPL17P7 Gene(Pseudogene)

Ribosomal Protein L17 Pseudogene 7

GCID:
GC01P108992
GIFtS:
12
Genes Participants
UDN Logo

Aliases for RPL17P7 Gene

Aliases for RPL17P7 Gene

  • Ribosomal Protein L17 Pseudogene 7 2 3
  • RPL17_3_82 3
  • BX679664.3 5
  • RPL17L 3

External Ids for RPL17P7 Gene

Previous GeneCards Identifiers for RPL17P7 Gene

  • GC01P109318
  • GC01P109535

Summaries for RPL17P7 Gene

GeneCards Summary for RPL17P7 Gene

RPL17P7 (Ribosomal Protein L17 Pseudogene 7) is a Pseudogene.

Additional gene information for RPL17P7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P7 Gene

Genomics for RPL17P7 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPL17P7 Gene

Promoters and enhancers for RPL17P7 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I109482 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 110.5 +491.9 491850 2.3 CLOCK YBX1 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 ATXN7L2 ENSG00000258634 RPL17P7 PRPF38B STRIP1 CLCC1 SYPL2 RPS27P6 ENSG00000273373 RBM15
GH01I109099 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 36.5 +108.3 108296 2.1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MEF2D ENSG00000270066 GC01P109116 SCARNA2 GC01P109104 ENSG00000258634 RPL17P7 PRPF38B RPS27P6 GNAI3 C1orf194
GH01I108197 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 23.9 -792.6 -792611 3.9 CLOCK NEUROD1 SIN3A ZNF2 ZBTB7B POLR2B E2F8 ZNF143 FOS DEK SLC25A24 ENSG00000280186 ENSG00000260879 PRPF38B RPL17P7 RPS27P6 ENSG00000226822 FAM102B PIR34396
GH01I109493 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 27.7 +501.7 501725 1.6 PKNOX1 SMAD1 ARID4B SIN3A ZNF2 YY1 POLR2B ZNF213 E2F8 ZNF207 CYB561D1 ENSG00000258634 PRPF38B RPL17P7 SYPL2 STRIP1 RPS27P6 ENSG00000273373 RBM15 ATXN7L2
GH01I109910 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 21.5 +920.5 920543 5.6 HDGF PKNOX1 SMAD1 ARNT SIN3A ZNF2 POLR2B ZNF213 ZNF416 ZNF143 CSF1 ENSG00000258634 RPL17P7 RPS27P6 ENSG00000235005 STRIP1 ENSG00000273373 GSTM2 GC01P109923
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17P7 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P7 Gene

Genomic Locations for RPL17P7 Gene
chr1:108,992,254-108,992,871
(GRCh38/hg38)
Size:
618 bases
Orientation:
Plus strand
chr1:109,534,858-109,535,493
(GRCh37/hg19)

Genomic View for RPL17P7 Gene

Genes around RPL17P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P7 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL17P7 Gene

Proteins for RPL17P7 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL17P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P7 Gene

Domains & Families for RPL17P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P7 Gene

Function for RPL17P7 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPL17P7 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P7 Gene

Localization for RPL17P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P7 Gene

Pathways & Interactions for RPL17P7 Gene

SuperPathways for RPL17P7 Gene

PathCards logo More details on SuperPathways for RPL17P7
No Data Available

Interacting Proteins for RPL17P7 Gene

Gene Ontology (GO) - Biological Process for RPL17P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P7 Gene

Drugs & Compounds for RPL17P7 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL17P7 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPL17P7 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P7 Gene

No ASD Table

Relevant External Links for RPL17P7 Gene

GeneLoc Exon Structure for
RPL17P7
ECgene alternative splicing isoforms for
RPL17P7

Expression for RPL17P7 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P7 Gene

mRNA expression in normal human tissues for RPL17P7 Gene
mRNA expression by GTEx for RPL17P7 GenemRNA expression by BioGPS for RPL17P7 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P7 Gene:

RPL17P7
genes like me logo Genes that share expression patterns with RPL17P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P7 Gene

Orthologs for RPL17P7 Gene

Evolution for RPL17P7 Gene

ENSEMBL:
Gene Tree for RPL17P7 (if available)
TreeFam:
Gene Tree for RPL17P7 (if available)

No data available for Orthologs for RPL17P7 Gene

Paralogs for RPL17P7 Gene

No data available for Paralogs for RPL17P7 Gene

Variants for RPL17P7 Gene

Additional Variant Information for RPL17P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P7 Gene

Disorders for RPL17P7 Gene

No disorders were found for RPL17P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P7 Gene

Publications for RPL17P7 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for RPL17P7 Gene

Sources for RPL17P7 Gene

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