Aliases for RPL17P40 Gene

Aliases for RPL17P40 Gene

  • Ribosomal Protein L17 Pseudogene 40 2 3 5
  • RPL17_15_1477 3
  • RPL17P40 5

External Ids for RPL17P40 Gene

Previous GeneCards Identifiers for RPL17P40 Gene

  • GC16U900951
  • GC16M016188

Summaries for RPL17P40 Gene

GeneCards Summary for RPL17P40 Gene

RPL17P40 (Ribosomal Protein L17 Pseudogene 40) is a Pseudogene.

Additional gene information for RPL17P40 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL17P40 Gene

Genomics for RPL17P40 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL17P40 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J016095 Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 -1.5 -1519 3.2 CTCF FOXA1 FOXA2 RBM22 NR2F2 BHLHE40 RXRA FOXP1 ZNF384 RPL17P40 lnc-ABCC6-4 NPIPA5 ABCC1 piR-33422-164 ABCC6
GH16J016092 Enhancer 0.8 Ensembl ENCODE dbSUPER 600.7 +1.7 1669 1.9 KDM1A ZNF316 MAFF MAFK ZFHX2 BCOR ZMYM3 RPL17P40 lnc-ABCC6-4 NOMO3 piR-57133-223 ABCC6 ABCC1
GH16J016073 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +20.1 20088 4 TEAD4 KDM1A ZIC2 POLR2A SP1 ZXDB CEBPB ESR1 ZKSCAN1 RBM22 ABCC1 NDE1 lnc-ABCC6-4 RPL17P40 piR-57133-223 ABCC6
GH16J016083 Enhancer 0.9 ENCODE dbSUPER 0.4 +11.3 11270 0.2 JUND REST HDAC1 NKRF USF2 HDAC2 RAD51 USF1 MNT FOSL1 LOC100505915 RRN3 PKD1P6 PKD1P1 RPL17P40 lnc-ABCC6-4 piR-57133-223 ABCC1 ABCC6
GH16J016099 Enhancer 0.4 ENCODE dbSUPER 0.7 -4.6 -4556 0.7 POLR2A RPL17P40 lnc-ABCC6-4 piR-33422-164 ABCC6 ABCC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL17P40 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL17P40 Gene

Genomic Locations for RPL17P40 Gene
chr16:16,094,033-16,095,209
(GRCh38/hg38)
Size:
1,177 bases
Orientation:
Minus strand
chr16:16,187,890-16,189,066
(GRCh37/hg19)
Size:
1,177 bases
Orientation:
Minus strand

Genomic View for RPL17P40 Gene

Genes around RPL17P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P40 Gene

Proteins for RPL17P40 Gene

Post-translational modifications for RPL17P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P40 Gene

Domains & Families for RPL17P40 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL17P40 Gene

Function for RPL17P40 Gene

Phenotypes From GWAS Catalog for RPL17P40 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P40 Gene

Localization for RPL17P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P40 Gene

Pathways & Interactions for RPL17P40 Gene

PathCards logo

SuperPathways for RPL17P40 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL17P40 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL17P40 Gene

Drugs & Compounds for RPL17P40 Gene

No Compound Related Data Available

Transcripts for RPL17P40 Gene

mRNA/cDNA for RPL17P40 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P40 Gene

No ASD Table

Relevant External Links for RPL17P40 Gene

GeneLoc Exon Structure for
RPL17P40

Expression for RPL17P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL17P40 Gene

genes like me logo Genes that share expression patterns with RPL17P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P40 Gene

Orthologs for RPL17P40 Gene

Evolution for RPL17P40 Gene

ENSEMBL:
Gene Tree for RPL17P40 (if available)
TreeFam:
Gene Tree for RPL17P40 (if available)

No data available for Orthologs for RPL17P40 Gene

Paralogs for RPL17P40 Gene

No data available for Paralogs for RPL17P40 Gene

Variants for RPL17P40 Gene

Additional Variant Information for RPL17P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P40 Gene

Disorders for RPL17P40 Gene

No disorders were found for RPL17P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P40 Gene

Publications for RPL17P40 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

Products for RPL17P40 Gene

Sources for RPL17P40 Gene