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Aliases for RPL17P40 Gene

Aliases for RPL17P40 Gene

  • Ribosomal Protein L17 Pseudogene 40 2 3
  • RPL17_15_1477 3

External Ids for RPL17P40 Gene

Previous GeneCards Identifiers for RPL17P40 Gene

  • GC16U900951

Summaries for RPL17P40 Gene

GeneCards Summary for RPL17P40 Gene

RPL17P40 (Ribosomal Protein L17 Pseudogene 40) is a Pseudogene.

Additional gene information for RPL17P40 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P40 Gene

Genomics for RPL17P40 Gene

GeneHancer (GH) Regulatory Elements for RPL17P40 Gene

Promoters and enhancers for RPL17P40 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I016095 Enhancer 0.9 Ensembl ENCODE dbSUPER 550.8 -1.5 -1519 3.2 CTCF FOXA2 ZNF384 FOXP1 FOXA1 RPL17P40 NPIPA5 ABCC1 PIR44788
GH16I016092 Enhancer 0.7 ENCODE dbSUPER 550.8 +1.7 1669 1.9 BCOR ZFHX2 ZNF316 ZMYM3 MAFK RPL17P40 NOMO3 GC16P016010 ABCC1
GH16I016119 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.3 -25.5 -25467 2.8 PKNOX1 ATF1 ARNT NCOA2 TCF12 GATA2 ATF7 NCOA1 ZNF592 MBD2 PKD1P6 RNU6-213P FOPNL PKD1P1 MIR3179-2 NDE1 ABCC1 PIR44788 RPL17P40
GH16I016083 Enhancer 1 ENCODE dbSUPER 0.4 +11.3 11270 0.2 HDAC1 MEIS2 USF1 MAX SIN3A ZNF507 FOSL1 GATAD1 PHF20 ADNP LOC100505915 RRN3 PKD1P6 PKD1P1 RPL17P40 GC16P016010 ABCC1
GH16I016073 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +20.1 20088 4 BCOR MAX ZMYM3 ZIC2 ZKSCAN1 GATA3 POLR2A HLF ELF1 GABPA ABCC1 NDE1 RPL17P40 GC16P016010
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17P40 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P40 Gene

Genomic Locations for RPL17P40 Gene
chr16:16,094,033-16,095,209
(GRCh38/hg38)
Size:
1,177 bases
Orientation:
Minus strand
chr16:16,187,890-16,189,066
(GRCh37/hg19)

Genomic View for RPL17P40 Gene

Genes around RPL17P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P40 Gene

Proteins for RPL17P40 Gene

Post-translational modifications for RPL17P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P40 Gene

Domains & Families for RPL17P40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P40 Gene

Function for RPL17P40 Gene

Phenotypes From GWAS Catalog for RPL17P40 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P40 Gene

Localization for RPL17P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P40 Gene

Pathways & Interactions for RPL17P40 Gene

SuperPathways for RPL17P40 Gene

No Data Available

Interacting Proteins for RPL17P40 Gene

Gene Ontology (GO) - Biological Process for RPL17P40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P40 Gene

Drugs & Compounds for RPL17P40 Gene

No Compound Related Data Available

Transcripts for RPL17P40 Gene

mRNA/cDNA for RPL17P40 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P40 Gene

No ASD Table

Relevant External Links for RPL17P40 Gene

GeneLoc Exon Structure for
RPL17P40
ECgene alternative splicing isoforms for
RPL17P40

Expression for RPL17P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P40 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P40 Gene:

RPL17P40
genes like me logo Genes that share expression patterns with RPL17P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P40 Gene

Orthologs for RPL17P40 Gene

Evolution for RPL17P40 Gene

ENSEMBL:
Gene Tree for RPL17P40 (if available)
TreeFam:
Gene Tree for RPL17P40 (if available)

No data available for Orthologs for RPL17P40 Gene

Paralogs for RPL17P40 Gene

No data available for Paralogs for RPL17P40 Gene

Variants for RPL17P40 Gene

Additional Variant Information for RPL17P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P40 Gene

Disorders for RPL17P40 Gene

No disorders were found for RPL17P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P40 Gene

Publications for RPL17P40 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL17P40 Gene

Sources for RPL17P40 Gene

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