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Aliases for RPL17P39 Gene

Aliases for RPL17P39 Gene

  • Ribosomal Protein L17 Pseudogene 39 2 3
  • RPL17_14_1450 3
  • HCG2004593 3
  • AC064799.1 5

External Ids for RPL17P39 Gene

Previous GeneCards Identifiers for RPL17P39 Gene

  • GC15M069427
  • GC15M071634

Summaries for RPL17P39 Gene

Entrez Gene Summary for RPL17P39 Gene

  • Although this locus has an open reading frame that could produce a protein of the same or nearly the same size as that of the RPL17 gene, no convincing evidence of transcription exists. It is thus being annotated as a pseudogene. [provided by RefSeq, Feb 2009]

GeneCards Summary for RPL17P39 Gene

RPL17P39 (Ribosomal Protein L17 Pseudogene 39) is a Pseudogene.

Additional gene information for RPL17P39 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P39 Gene

Genomics for RPL17P39 Gene

GeneHancer (GH) Regulatory Elements for RPL17P39 Gene

Promoters and enhancers for RPL17P39 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I072225 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 55.2 -887.5 -887505 8 CLOCK MLX FEZF1 DMAP1 YBX1 IRF4 SLC30A9 ZNF213 E2F8 ZNF416 PKM ENSG00000261187 LOC105370887 HEXA MYO9A TMEM202-AS1 ARIH1 ADPGK CELF6 RPL17P39
GH15I071110 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 36.4 +227.6 227591 7.2 ARNT SIN3A FEZF1 ZNF2 ZBTB7B ZNF213 ZNF143 KLF13 DEK SP3 CT62 THSD4 RPL17P39
GH15I071082 Enhancer 1.1 ENCODE dbSUPER 63.2 +258.4 258445 2.1 ZNF493 ZFP64 ZNF121 ZNF213 KLF7 ZNF548 ZNF202 SP3 JUNB REST RPL17P39 LRRC49 THAP10 CT62 LARP6 ENSG00000259744 TLE3 LOC105370886 RPL5P3
GH15I072116 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 24.9 -776.4 -776433 4 HDGF PKNOX1 CLOCK ARID4B SIN3A FEZF1 ZNF2 YY1 POLR2B ZNF766 MYO9A SENP8 CELF6 ENSG00000261187 PARP6 RPL17P39 BBS4 ARIH1 TMEM202-AS1 ENSG00000260672
GH15I072194 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 20.8 -857.8 -857773 9.6 FOXA2 ZFP64 ARID4B SIN3A FEZF1 ZNF2 IRF4 ZNF48 POLR2B GLIS2 GRAMD2A PARP6 ENSG00000261187 LOC105370887 RPL17P39 HEXA CELF6 PKM TMEM202-AS1 ARIH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17P39 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P39 Gene

Genomic Locations for RPL17P39 Gene
625 bases
Minus strand

Genomic View for RPL17P39 Gene

Genes around RPL17P39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P39 Gene

Proteins for RPL17P39 Gene

Post-translational modifications for RPL17P39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P39 Gene

Domains & Families for RPL17P39 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P39 Gene

Function for RPL17P39 Gene

Phenotypes From GWAS Catalog for RPL17P39 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P39 Gene

Localization for RPL17P39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P39 Gene

Pathways & Interactions for RPL17P39 Gene

SuperPathways for RPL17P39 Gene

No Data Available

Interacting Proteins for RPL17P39 Gene

Gene Ontology (GO) - Biological Process for RPL17P39 Gene


No data available for Pathways by source and SIGNOR curated interactions for RPL17P39 Gene

Drugs & Compounds for RPL17P39 Gene

No Compound Related Data Available

Transcripts for RPL17P39 Gene

mRNA/cDNA for RPL17P39 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P39 Gene

No ASD Table

Relevant External Links for RPL17P39 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RPL17P39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P39 Gene

Protein differential expression in normal tissues from HIPED for RPL17P39 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPL17P39 Gene

Protein tissue co-expression partners for RPL17P39 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL17P39 Gene:

genes like me logo Genes that share expression patterns with RPL17P39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P39 Gene

Orthologs for RPL17P39 Gene

Evolution for RPL17P39 Gene

Gene Tree for RPL17P39 (if available)
Gene Tree for RPL17P39 (if available)

No data available for Orthologs for RPL17P39 Gene

Paralogs for RPL17P39 Gene

No data available for Paralogs for RPL17P39 Gene

Variants for RPL17P39 Gene

Additional Variant Information for RPL17P39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P39 Gene

Disorders for RPL17P39 Gene

No disorders were found for RPL17P39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P39 Gene

Publications for RPL17P39 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for RPL17P39 Gene

Sources for RPL17P39 Gene

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