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Aliases for RPL17P30 Gene

Subcategory (RNA class) for RPL17P30 Gene

lncRNA

Aliases for RPL17P30 Gene

  • Ribosomal Protein L17 Pseudogene 30 2 3
  • RPL17_20_898 3
  • AC103724.1 5

External Ids for RPL17P30 Gene

ORGUL Members for RPL17P30 Gene

Previous GeneCards Identifiers for RPL17P30 Gene

  • GC08U901159
  • GC08P041959

Summaries for RPL17P30 Gene

GeneCards Summary for RPL17P30 Gene

RPL17P30 (Ribosomal Protein L17 Pseudogene 30) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL17P30 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P30 Gene

Genomics for RPL17P30 Gene

GeneHancer (GH) Regulatory Elements for RPL17P30 Gene

Promoters and enhancers for RPL17P30 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I042125 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +24.9 24940 0.8 JUN MAX RFX5 HIC1 PATZ1 FOSL2 FOS KLF8 ZNF639 RNF2 KAT6A ENSG00000238966 ANK1 AP3M2 GC08M042131 RPL17P30
GH08I042123 Enhancer 0.8 ENCODE dbSUPER 0.3 +22.7 22694 0.8 SOX5 SOX13 PKNOX1 USF1 TEAD1 CEBPB TEAD3 MITF POU5F1 KAT6A ENSG00000238966 ANK1 AP3M2 GC08M042131 RPL17P30
GH08I042084 Enhancer 0.4 ENCODE 0.4 -16.1 -16119 1.1 CTCF FOXA2 RPL17P30 KAT6A LOC105379393
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17P30 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P30 Gene

Genomic Locations for RPL17P30 Gene
chr8:42,101,318-42,101,840
(GRCh38/hg38)
Size:
523 bases
Orientation:
Plus strand
chr8:41,958,836-41,959,358
(GRCh37/hg19)

Genomic View for RPL17P30 Gene

Genes around RPL17P30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P30 Gene

Proteins for RPL17P30 Gene

Post-translational modifications for RPL17P30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P30 Gene

Domains & Families for RPL17P30 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P30 Gene

Function for RPL17P30 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P30 Gene

Localization for RPL17P30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P30 Gene

Pathways & Interactions for RPL17P30 Gene

SuperPathways for RPL17P30 Gene

No Data Available

Interacting Proteins for RPL17P30 Gene

Gene Ontology (GO) - Biological Process for RPL17P30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P30 Gene

Drugs & Compounds for RPL17P30 Gene

No Compound Related Data Available

Transcripts for RPL17P30 Gene

mRNA/cDNA for RPL17P30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P30 Gene

No ASD Table

Relevant External Links for RPL17P30 Gene

GeneLoc Exon Structure for
RPL17P30
ECgene alternative splicing isoforms for
RPL17P30

Expression for RPL17P30 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P30 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P30 Gene:

RPL17P30
genes like me logo Genes that share expression patterns with RPL17P30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P30 Gene

Orthologs for RPL17P30 Gene

Evolution for RPL17P30 Gene

ENSEMBL:
Gene Tree for RPL17P30 (if available)
TreeFam:
Gene Tree for RPL17P30 (if available)

No data available for Orthologs for RPL17P30 Gene

Paralogs for RPL17P30 Gene

No data available for Paralogs for RPL17P30 Gene

Variants for RPL17P30 Gene

Additional Variant Information for RPL17P30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P30 Gene

Disorders for RPL17P30 Gene

No disorders were found for RPL17P30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P30 Gene

Publications for RPL17P30 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL17P30 Gene

Sources for RPL17P30 Gene

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