Aliases for RPL17P29 Gene

Aliases for RPL17P29 Gene

  • Ribosomal Protein L17 Pseudogene 29 2 3
  • Ribosomal Protein L17 (RPL17) Pseudogene 5
  • RPL17_18_874 3
  • AF131215.1 5

External Ids for RPL17P29 Gene

Previous GeneCards Identifiers for RPL17P29 Gene

  • GC08U901164
  • GC08P011033

Summaries for RPL17P29 Gene

GeneCards Summary for RPL17P29 Gene

RPL17P29 (Ribosomal Protein L17 Pseudogene 29) is a Pseudogene.

Additional gene information for RPL17P29 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL17P29 Gene

Genomics for RPL17P29 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL17P29 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J011174 Enhancer 0.2 FANTOM5 250.7 -0.2 -171 0.4 HSALNG0063420 RPL17P29 ENSG00000255310 XKR6 ENSG00000254936 lnc-FAM167A-5 PINX1
GH08J011170 Enhancer 0.3 Ensembl 0.7 -4.4 -4409 0.4 ZNF146 ENSG00000254936 XKR6 ENSG00000269918 RPL17P29 lnc-FAM167A-5 PINX1
GH08J011162 Enhancer 0.5 Ensembl 0.4 -10.8 -10809 1.6 ZNF24 SPI1 POLR2A RUNX3 ETV6 lnc-FAM167A-5 ENSG00000255310 XKR6 ENSG00000254936 LOC101929269 ENSG00000269918 RPL17P29 PINX1
GH08J011168 Enhancer 0.3 ENCODE 0.4 -6.0 -5961 1.4 ZNF680 CEBPB ENSG00000254936 XKR6 ENSG00000269918 lnc-FAM167A-5 RPL17P29 PINX1
GH08J011163 Enhancer 0.3 Ensembl 0.4 -12.5 -12509 0.6 ATF2 lnc-FAM167A-5 ENSG00000254936 ENSG00000255310 LOC101929269 RPL17P29 XKR6 PINX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL17P29 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL17P29 Gene

Latest Assembly
chr8:11,175,010-11,175,616
(GRCh38/hg38)
Size:
607 bases
Orientation:
Plus strand

Previous Assembly
chr8:11,032,519-11,033,125
(GRCh37/hg19 by Entrez Gene)
Size:
607 bases
Orientation:
Plus strand

chr8:11,032,560-11,033,079
(GRCh37/hg19 by Ensembl)
Size:
520 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):2,171,285-2,171,891 (-)

Genomic View for RPL17P29 Gene

Genes around RPL17P29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P29 Gene

Proteins for RPL17P29 Gene

Post-translational modifications for RPL17P29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P29 Gene

Domains & Families for RPL17P29 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL17P29 Gene

Function for RPL17P29 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P29 Gene

Localization for RPL17P29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P29 Gene

Pathways & Interactions for RPL17P29 Gene

PathCards logo

SuperPathways for RPL17P29 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL17P29 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL17P29 Gene

Drugs & Compounds for RPL17P29 Gene

No Compound Related Data Available

Transcripts for RPL17P29 Gene

mRNA/cDNA for RPL17P29 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P29 Gene

No ASD Table

Relevant External Links for RPL17P29 Gene

GeneLoc Exon Structure for
RPL17P29

Expression for RPL17P29 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL17P29 Gene

mRNA differential expression in normal tissues according to GTEx for RPL17P29 Gene

This gene is overexpressed in Brain - Cerebellum (x6.9).
genes like me logo Genes that share expression patterns with RPL17P29: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P29 Gene

Orthologs for RPL17P29 Gene

Evolution for RPL17P29 Gene

ENSEMBL:
Gene Tree for RPL17P29 (if available)
TreeFam:
Gene Tree for RPL17P29 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPL17P29

No data available for Orthologs for RPL17P29 Gene

Paralogs for RPL17P29 Gene

No data available for Paralogs for RPL17P29 Gene

Variants for RPL17P29 Gene

Additional Variant Information for RPL17P29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P29
Leiden Open Variation Database (LOVD)
RPL17P29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P29 Gene

Disorders for RPL17P29 Gene

No disorders were found for RPL17P29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P29 Gene

Publications for RPL17P29 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo. (PMID: 21060863) Ikram MK … Wong TY (PLoS genetics 2010) 40

No data available for Mastermind for RPL17P29 Gene

Products for RPL17P29 Gene

Sources for RPL17P29 Gene