Aliases for RPL17P28 Gene

Aliases for RPL17P28 Gene

  • Ribosomal Protein L17 Pseudogene 28 2 3
  • Ribosomal Protein L17 (RPL17) Pseudogene 5
  • RPL17_7_858 3
  • AC018644.1 5

External Ids for RPL17P28 Gene

Previous GeneCards Identifiers for RPL17P28 Gene

  • GC07U902613
  • GC07M138735

Summaries for RPL17P28 Gene

GeneCards Summary for RPL17P28 Gene

RPL17P28 (Ribosomal Protein L17 Pseudogene 28) is a Pseudogene.

Additional gene information for RPL17P28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL17P28 Gene

Genomics for RPL17P28 Gene

GeneHancer (GH) Regulatory Elements for RPL17P28 Gene

Promoters and enhancers for RPL17P28 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J139047 Enhancer 0.6 dbSUPER 500.7 +1.8 1806 1.6 ZNF316 CEBPG NFE2 FOSL1 MAFK MAFG BCL3 ATF3 BACH1 JUND RPL17P28 lnc-ZC3HAV1L-1 KIAA1549 ZC3HAV1L ZC3HAV1 MIR10399-001
GH07J139043 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.6 +6.0 6005 6 NRF1 ZBTB5 REST ZBTB11 AFF1 TARDBP HES1 ZNF740 NR3C1 TOE1 MIR10399-001 KIAA1549 ZC3HAV1L RPL17P28 ZC3HAV1
GH07J139053 Enhancer 0.6 dbSUPER 0.7 -4.3 -4294 1.1 MXI1 GATA3 PBX2 NFE2 RCOR1 MAFG MEIS2 GATA2 PKNOX1 SPI1 ZC3HAV1 RPL17P28 lnc-ZC3HAV1L-1 RF00017-6675
GH07J139070 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -22.4 -22395 3.6 SPI1 MEIS2 ZBTB33 ZNF274 RUNX3 RF00017-6675 ZC3HAV1 ZC3HAV1L SVOPL lnc-ZC3HAV1L-2 RPL17P28 lnc-ZC3HAV1L-1
GH07J139058 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 -10.1 -10087 3 FEZF1 JUN ATF3 ZC3HAV1L TTC26 KIAA1549 RF00017-6675 RPL17P28 lnc-ZC3HAV1L-1 ZC3HAV1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL17P28 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P28 Gene

Genomic Locations for RPL17P28 Gene
chr7:139,049,456-139,050,006
(GRCh38/hg38)
Size:
551 bases
Orientation:
Minus strand
chr7:138,734,202-138,734,752
(GRCh37/hg19)
Size:
551 bases
Orientation:
Minus strand

Genomic View for RPL17P28 Gene

Genes around RPL17P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P28 Gene

Proteins for RPL17P28 Gene

Post-translational modifications for RPL17P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P28 Gene

Domains & Families for RPL17P28 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL17P28 Gene

Function for RPL17P28 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P28 Gene

Localization for RPL17P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P28 Gene

Pathways & Interactions for RPL17P28 Gene

PathCards logo

SuperPathways for RPL17P28 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPL17P28 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL17P28 Gene

Drugs & Compounds for RPL17P28 Gene

No Compound Related Data Available

Transcripts for RPL17P28 Gene

mRNA/cDNA for RPL17P28 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P28 Gene

No ASD Table

Relevant External Links for RPL17P28 Gene

GeneLoc Exon Structure for
RPL17P28

Expression for RPL17P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL17P28 Gene

mRNA differential expression in normal tissues according to GTEx for RPL17P28 Gene

This gene is overexpressed in Whole Blood (x4.3).
genes like me logo Genes that share expression patterns with RPL17P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P28 Gene

Orthologs for RPL17P28 Gene

Evolution for RPL17P28 Gene

ENSEMBL:
Gene Tree for RPL17P28 (if available)
TreeFam:
Gene Tree for RPL17P28 (if available)

No data available for Orthologs for RPL17P28 Gene

Paralogs for RPL17P28 Gene

No data available for Paralogs for RPL17P28 Gene

Variants for RPL17P28 Gene

Additional Variant Information for RPL17P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P28 Gene

Disorders for RPL17P28 Gene

No disorders were found for RPL17P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P28 Gene

Publications for RPL17P28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54

No data available for Mastermind for RPL17P28 Gene

Products for RPL17P28 Gene

Sources for RPL17P28 Gene