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Aliases for RPL17P28 Gene

Subcategory (RNA class) for RPL17P28 Gene

lncRNA

Aliases for RPL17P28 Gene

  • Ribosomal Protein L17 Pseudogene 28 2 3
  • RPL17_7_858 3
  • AC018644.1 5

External Ids for RPL17P28 Gene

ORGUL Members for RPL17P28 Gene

Previous GeneCards Identifiers for RPL17P28 Gene

  • GC07U902613
  • GC07M138735

Summaries for RPL17P28 Gene

GeneCards Summary for RPL17P28 Gene

RPL17P28 (Ribosomal Protein L17 Pseudogene 28) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL17P28 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P28 Gene

Genomics for RPL17P28 Gene

GeneHancer (GH) Regulatory Elements for RPL17P28 Gene

Promoters and enhancers for RPL17P28 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I139047 Enhancer 0.6 dbSUPER 550.8 +1.8 1806 1.6 MAFG BACH1 CEBPG FOSL1 ZNF316 SMARCA4 NFE2 EMSY MAFK RPL17P28 KIAA1549 ZC3HAV1L ZC3HAV1 GC07P138894
GH07I139043 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +5.4 5434 2.6 HDGF PKNOX1 SMAD1 ATF1 FOXA2 ARNT NCOA2 TCF12 ZNF766 GATA2 KIAA1549 ZC3HAV1L LUC7L2 RPL17P28 ZC3HAV1 GC07P138894
GH07I139101 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 -57.5 -57481 11.2 FEZF1 DMAP1 YBX1 YY1 E2F8 ZNF143 SP3 MEF2D ZNF610 GLIS1 ZC3HAV1 LUC7L2 UBN2 TTC26 ZC3HAV1L PARP12 RPL17P28 GC07P138894
GH07I139090 Enhancer 1.5 Ensembl ENCODE dbSUPER 0.3 -43.9 -43937 6.6 HDGF PKNOX1 SMAD1 ARNT POLR2B ZNF766 CBX5 E2F8 ZNF143 REST LUC7L2 UBN2 ZC3HAV1 TTC26 RPL17P28 GC07P138894
GH07I139053 Enhancer 0.5 dbSUPER 0.8 -4.3 -4294 1.1 MEIS2 PKNOX1 IKZF1 MAFG RCOR1 NFE2 SPI1 ZC3HAV1 RPL17P28 GC07P138894
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17P28 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P28 Gene

Genomic Locations for RPL17P28 Gene
chr7:139,049,456-139,050,006
(GRCh38/hg38)
Size:
551 bases
Orientation:
Minus strand
chr7:138,734,202-138,734,752
(GRCh37/hg19)

Genomic View for RPL17P28 Gene

Genes around RPL17P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P28 Gene

Proteins for RPL17P28 Gene

Post-translational modifications for RPL17P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P28 Gene

Domains & Families for RPL17P28 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P28 Gene

Function for RPL17P28 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P28 Gene

Localization for RPL17P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P28 Gene

Pathways & Interactions for RPL17P28 Gene

SuperPathways for RPL17P28 Gene

No Data Available

Interacting Proteins for RPL17P28 Gene

Gene Ontology (GO) - Biological Process for RPL17P28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P28 Gene

Drugs & Compounds for RPL17P28 Gene

No Compound Related Data Available

Transcripts for RPL17P28 Gene

mRNA/cDNA for RPL17P28 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P28 Gene

No ASD Table

Relevant External Links for RPL17P28 Gene

GeneLoc Exon Structure for
RPL17P28
ECgene alternative splicing isoforms for
RPL17P28

Expression for RPL17P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P28 Gene

mRNA differential expression in normal tissues according to GTEx for RPL17P28 Gene

This gene is overexpressed in Whole Blood (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of RPL17P28 Gene:

RPL17P28
genes like me logo Genes that share expression patterns with RPL17P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P28 Gene

Orthologs for RPL17P28 Gene

Evolution for RPL17P28 Gene

ENSEMBL:
Gene Tree for RPL17P28 (if available)
TreeFam:
Gene Tree for RPL17P28 (if available)

No data available for Orthologs for RPL17P28 Gene

Paralogs for RPL17P28 Gene

No data available for Paralogs for RPL17P28 Gene

Variants for RPL17P28 Gene

Additional Variant Information for RPL17P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P28 Gene

Disorders for RPL17P28 Gene

No disorders were found for RPL17P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL17P28 Gene

Publications for RPL17P28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL17P28 Gene

Sources for RPL17P28 Gene

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