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Aliases for RPL17P2 Gene

Subcategory (RNA class) for RPL17P2 Gene

lncRNA

Aliases for RPL17P2 Gene

  • Ribosomal Protein L17 Pseudogene 2 2 3 5
  • RPL17_13_1376 3

External Ids for RPL17P2 Gene

ORGUL Members for RPL17P2 Gene

Previous GeneCards Identifiers for RPL17P2 Gene

  • GC14U900554
  • GC14M060680

Summaries for RPL17P2 Gene

GeneCards Summary for RPL17P2 Gene

RPL17P2 (Ribosomal Protein L17 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL17P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL17P2 Gene

Genomics for RPL17P2 Gene

GeneHancer (GH) Regulatory Elements for RPL17P2 Gene

Promoters and enhancers for RPL17P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I060212 Enhancer 0.9 FANTOM5 550.8 +0.1 92 0.8 PKNOX1 SMAD1 RB1 EBF1 BMI1 KLF5 RELA POLR2A FOXK2 ATF7 RPL17P2 PPM1A LOC101927702 GC14P060180
GH14I060204 Enhancer 1 FANTOM5 ENCODE 0.4 +8.2 8203 1.2 HDGF PKNOX1 BMI1 BATF KLF5 IRF4 ATF7 ETV6 BCLAF1 IKZF2 PPM1A LOC101927702 TRMT5 L3HYPDH DHRS7 RPL17P2 GC14P060180
GH14I060183 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +28.8 28777 1.8 MEIS2 CTCF PKNOX1 RB1 RAD21 RFX5 ZNF335 ZNF143 SMC3 ATF7 RTN1 LOC101927702 PPM1A C14orf39 GC14P060180 RPL17P2
GH14I060178 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +33.2 33203 1.6 PKNOX1 JUNB BATF ZNF316 NFE2 PRDM1 RUNX3 MAFK NFE2L2 GC14P060180 PSMA3P PPM1A RTN1 LOC101927702 PCNX4 C14orf39 RPL17P2
GH14I060245 Promoter 0.9 EPDnew 0.3 -32.8 -32777 0.1 HDGF ATF2 ZNF366 VEZF1 ZNF512 PRDM10 ATF7 PRDM1 PPM1A LOC101927702 RPL17P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL17P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL17P2 Gene

Genomic Locations for RPL17P2 Gene
chr14:60,212,453-60,212,954
(GRCh38/hg38)
Size:
502 bases
Orientation:
Minus strand
chr14:60,679,180-60,679,748
(GRCh37/hg19)

Genomic View for RPL17P2 Gene

Genes around RPL17P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL17P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL17P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL17P2 Gene

Proteins for RPL17P2 Gene

Post-translational modifications for RPL17P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL17P2 Gene

Domains & Families for RPL17P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL17P2 Gene

Function for RPL17P2 Gene

Phenotypes From GWAS Catalog for RPL17P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL17P2 Gene

Localization for RPL17P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL17P2 Gene

Pathways & Interactions for RPL17P2 Gene

SuperPathways for RPL17P2 Gene

No Data Available

Interacting Proteins for RPL17P2 Gene

Gene Ontology (GO) - Biological Process for RPL17P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL17P2 Gene

Drugs & Compounds for RPL17P2 Gene

No Compound Related Data Available

Transcripts for RPL17P2 Gene

mRNA/cDNA for RPL17P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL17P2 Gene

No ASD Table

Relevant External Links for RPL17P2 Gene

GeneLoc Exon Structure for
RPL17P2
ECgene alternative splicing isoforms for
RPL17P2

Expression for RPL17P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL17P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL17P2 Gene:

RPL17P2
genes like me logo Genes that share expression patterns with RPL17P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL17P2 Gene

Orthologs for RPL17P2 Gene

Evolution for RPL17P2 Gene

ENSEMBL:
Gene Tree for RPL17P2 (if available)
TreeFam:
Gene Tree for RPL17P2 (if available)

No data available for Orthologs for RPL17P2 Gene

Paralogs for RPL17P2 Gene

No data available for Paralogs for RPL17P2 Gene

Variants for RPL17P2 Gene

Additional Variant Information for RPL17P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL17P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL17P2 Gene

Disorders for RPL17P2 Gene

Additional Disease Information for RPL17P2

Genetic Association Database
(GAD)

No disorders were found for RPL17P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL17P2 Gene

Publications for RPL17P2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order. (PMID: 22036096) Ramasamy A … Jarvis DL (The Journal of allergy and clinical immunology 2011) 44 58

Products for RPL17P2 Gene

Sources for RPL17P2 Gene

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