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Aliases for RPL13P5 Gene

Aliases for RPL13P5 Gene

  • Ribosomal Protein L13 Pseudogene 5 2 3 5
  • Ribosomal Protein L13-Like 2
  • RPL13-2 Pseudogene 3
  • RPL13_4_1199 3
  • RPL13-2 3
  • RRPL13L 3
  • RPL13L 3

External Ids for RPL13P5 Gene

Previous HGNC Symbols for RPL13P5 Gene

  • RPL13L

Previous GeneCards Identifiers for RPL13P5 Gene

  • GC12P006866
  • GC12P006983
  • GC12P006984
  • GC12P006990
  • GC12P007002
  • GC12P007011
  • GC12P007026
  • GC12P007049
  • GC12P007113
  • GC12P007143

Summaries for RPL13P5 Gene

GeneCards Summary for RPL13P5 Gene

RPL13P5 (Ribosomal Protein L13 Pseudogene 5) is a Pseudogene.

Additional gene information for RPL13P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13P5 Gene

Genomics for RPL13P5 Gene

GeneHancer (GH) Regulatory Elements for RPL13P5 Gene

Promoters and enhancers for RPL13P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I006923 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 20.8 +53.8 53762 6.8 HDGF SMAD1 ARID4B SIN3A ZNF2 IRF4 YY1 ZNF213 ZNF143 FOS ATN1 ZNF384 LRRC23 CHD4 ENSG00000219410 ENSG00000247853 SCARNA12 EMG1 PHB2 RPL13P5
GH12I006940 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 +80.3 80269 25.9 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 PTPN6 C12orf57 ZNF384 ENSG00000219410 CHD4 ENSG00000247853 SPSB2 SCARNA12 ENSG00000256967 NCAPD2
GH12I006788 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.3 -82.3 -82313 5 HDGF ELF3 FOXA2 MLX ARID4B SIN3A RAD21 THRB ZNF48 RARA CD4 LPAR5 GPR162 P3H3 PTPN6 ING4 PTMS MLF2 GNB3 PIANP
GH12I006826 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 9.9 -44.7 -44691 3.7 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 POLR2B ZNF213 ZNF143 SP3 P3H3 ZNF384 ENSG00000219410 CHD4 ENSG00000247853 NCAPD2 NOP2 ATN1 SPSB2 EMG1
GH12I006662 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.7 -210.2 -210162 2.2 PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 ENSG00000219410 ING4 ZNF384 CHD4 ENSG00000247853 EMG1 NCAPD2 SPSB2 SCARNA12 NOP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL13P5 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL13P5 gene promoter:

Genomic Locations for RPL13P5 Gene

Genomic Locations for RPL13P5 Gene
chr12:6,873,389-6,884,741
(GRCh38/hg38)
Size:
11,353 bases
Orientation:
Plus strand
chr12:6,982,553-6,993,905
(GRCh37/hg19)

Genomic View for RPL13P5 Gene

Genes around RPL13P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13P5 Gene

Proteins for RPL13P5 Gene

Post-translational modifications for RPL13P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13P5 Gene

Domains & Families for RPL13P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13P5 Gene

Function for RPL13P5 Gene

Phenotypes From GWAS Catalog for RPL13P5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13P5 Gene

Localization for RPL13P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13P5 Gene

Pathways & Interactions for RPL13P5 Gene

SuperPathways for RPL13P5 Gene

No Data Available

Interacting Proteins for RPL13P5 Gene

Gene Ontology (GO) - Biological Process for RPL13P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13P5 Gene

Drugs & Compounds for RPL13P5 Gene

No Compound Related Data Available

Transcripts for RPL13P5 Gene

mRNA/cDNA for RPL13P5 Gene

(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13P5 Gene

Ribosomal protein L13 pseudogene 5:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13P5 Gene

No ASD Table

Relevant External Links for RPL13P5 Gene

GeneLoc Exon Structure for
RPL13P5
ECgene alternative splicing isoforms for
RPL13P5

Expression for RPL13P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13P5 Gene:

RPL13P5

SOURCE GeneReport for Unigene cluster for RPL13P5 Gene:

Hs.720698
genes like me logo Genes that share expression patterns with RPL13P5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13P5 Gene

Orthologs for RPL13P5 Gene

Evolution for RPL13P5 Gene

ENSEMBL:
Gene Tree for RPL13P5 (if available)
TreeFam:
Gene Tree for RPL13P5 (if available)

No data available for Orthologs for RPL13P5 Gene

Paralogs for RPL13P5 Gene

No data available for Paralogs for RPL13P5 Gene

Variants for RPL13P5 Gene

Sequence variations from dbSNP and Humsavar for RPL13P5 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1003021140 -- 6,884,160(+) T/C non_coding_transcript_variant
rs1003385959 -- 6,883,216(+) C/T upstream_transcript_variant
rs1004845827 -- 6,883,728(+) C/A upstream_transcript_variant
rs1005849743 -- 6,884,773(+) G/A downstream_transcript_variant
rs1008317062 -- 6,882,202(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL13P5 Gene

Variant ID Type Subtype PubMed ID
esv3580405 CNV gain 25503493
nsv1035811 CNV gain 25217958
nsv557261 CNV loss 21841781
nsv832324 CNV loss 17160897

Additional Variant Information for RPL13P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13P5 Gene

Disorders for RPL13P5 Gene

Additional Disease Information for RPL13P5

No disorders were found for RPL13P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13P5 Gene

Publications for RPL13P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Large-scale sequencing in human chromosome 12p13: experimental and computational gene structure determination. (PMID: 9074930) Ansari-Lari MA … Gibbs RA (Genome research 1997) 3 58

Products for RPL13P5 Gene

Sources for RPL13P5 Gene

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