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Aliases for RPL13P2 Gene

Aliases for RPL13P2 Gene

  • Ribosomal Protein L13 Pseudogene 2 2 3 5
  • Ribosomal Protein L13 Pseudogene 3 2 3
  • RPL13_7_1707 3
  • DJ599F21.2 3
  • RPL13P3 3

External Ids for RPL13P2 Gene

Previous HGNC Symbols for RPL13P2 Gene

  • RPL13P3

Previous GeneCards Identifiers for RPL13P2 Gene

  • GC20U990083
  • GC20P045366
  • GC20P045413
  • GC20P044161
  • GC20P044728
  • GC20P041469

Summaries for RPL13P2 Gene

GeneCards Summary for RPL13P2 Gene

RPL13P2 (Ribosomal Protein L13 Pseudogene 2) is a Pseudogene.

Additional gene information for RPL13P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13P2 Gene

Genomics for RPL13P2 Gene

GeneHancer (GH) Regulatory Elements for RPL13P2 Gene

Promoters and enhancers for RPL13P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I046099 Enhancer 0.7 Ensembl ENCODE 560.4 +0.3 299 0.7 CTCF USF1 EBF1 RUNX3 RAD21 RPL13P2 GC20P046113
GH20I046107 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 6.7 +9.0 9048 1.3 CTCF EBF1 BATF RAD21 IRF4 RELA POLR2A ZNF143 ATF7 ETV6 CD40 SPATA25 SLC12A5 SLC12A5-AS1 WFDC3 RPL13P2 SLC35C2 ZNF335 GC20P046113
GH20I046057 Enhancer 0.9 Ensembl ENCODE 4.5 -41.2 -41180 2.3 CTCF SUZ12 SIN3A ZSCAN9 ZNF366 ZNF143 ZNF600 EZH2 SMARCC1 REST RPL13P2 NCOA5 SLC12A5 LOC105372632
GH20I046111 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.9 11901 0.8 HDGF PKNOX1 BMI1 YBX1 IRF4 ZNF366 ZNF207 ATF7 ETV6 IKZF2 GC20P046113 CD40 NCOA5 PCIF1 SLC12A5 SLC12A5-AS1 ZNF663P SYS1 NEURL2 ZNF335
GH20I046112 Enhancer 0.4 FANTOM5 dbSUPER 0.4 +13.4 13446 0.2 GC20P046113 CD40 NCOA5 SLC12A5 SLC12A5-AS1 ZNF335 RPL13P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL13P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL13P2 Gene

Genomic Locations for RPL13P2 Gene
chr20:46,099,475-46,100,193
(GRCh38/hg38)
Size:
719 bases
Orientation:
Plus strand
chr20:44,728,114-44,728,832
(GRCh37/hg19)

Genomic View for RPL13P2 Gene

Genes around RPL13P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13P2 Gene

Proteins for RPL13P2 Gene

Post-translational modifications for RPL13P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13P2 Gene

Domains & Families for RPL13P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13P2 Gene

Function for RPL13P2 Gene

Phenotypes From GWAS Catalog for RPL13P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13P2 Gene

Localization for RPL13P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13P2 Gene

Pathways & Interactions for RPL13P2 Gene

SuperPathways for RPL13P2 Gene

No Data Available

Interacting Proteins for RPL13P2 Gene

Gene Ontology (GO) - Biological Process for RPL13P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13P2 Gene

Drugs & Compounds for RPL13P2 Gene

No Compound Related Data Available

Transcripts for RPL13P2 Gene

mRNA/cDNA for RPL13P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13P2 Gene

No ASD Table

Relevant External Links for RPL13P2 Gene

GeneLoc Exon Structure for
RPL13P2
ECgene alternative splicing isoforms for
RPL13P2

Expression for RPL13P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13P2 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13P2 Gene

This gene is overexpressed in Testis (x45.9) and Cervix - Endocervix (x7.1).

NURSA nuclear receptor signaling pathways regulating expression of RPL13P2 Gene:

RPL13P2
genes like me logo Genes that share expression patterns with RPL13P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13P2 Gene

Orthologs for RPL13P2 Gene

Evolution for RPL13P2 Gene

ENSEMBL:
Gene Tree for RPL13P2 (if available)
TreeFam:
Gene Tree for RPL13P2 (if available)

No data available for Orthologs for RPL13P2 Gene

Paralogs for RPL13P2 Gene

No data available for Paralogs for RPL13P2 Gene

Variants for RPL13P2 Gene

Additional Variant Information for RPL13P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13P2 Gene

Disorders for RPL13P2 Gene

Additional Disease Information for RPL13P2

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for RPL13P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13P2 Gene

Publications for RPL13P2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Common genetic variants in candidate genes and risk of familial lymphoid malignancies. (PMID: 19573080) Liang XS … Goldin LR (British journal of haematology 2009) 3 44 58
  3. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood HD … Lan Q (Occupational and environmental medicine 2009) 3 44 58
  4. Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis. (PMID: 22446961) Lee YC … Wu JY (Nature genetics 2012) 44 58
  5. Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci. (PMID: 22190364) Patsopoulos NA … de Bakker PI (Annals of neurology 2011) 44 58

Products for RPL13P2 Gene

Sources for RPL13P2 Gene

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