RPL13P12 Gene (Pseudogene)

Ribosomal Protein L13 Pseudogene 12

GC17M017383
GIFtS:
11

Aliases for RPL13P12 Gene

Aliases for RPL13P12 Gene

  • Ribosomal Protein L13 Pseudogene 12 2 3 5
  • RPL13_4_1521 3

External Ids for RPL13P12 Gene

Previous GeneCards Identifiers for RPL13P12 Gene

  • GC17M017219

Summaries for RPL13P12 Gene

GeneCards Summary for RPL13P12 Gene

RPL13P12 (Ribosomal Protein L13 Pseudogene 12) is a Pseudogene.

Additional gene information for RPL13P12 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL13P12 Gene

Genomics for RPL13P12 Gene

GeneHancer (GH) Regulatory Elements for RPL13P12 Gene

Promoters and enhancers for RPL13P12 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J017383 Promoter/Enhancer 0.6 Ensembl dbSUPER 750.6 +0.4 362 1 RFX1 RPL13P12 KRT16P6 HSALNG0114942
GH17J017384 Enhancer 0.3 CraniofacialAtlas dbSUPER 750.6 -0.9 -924 0.2 RPL13P12 HSALNG0114944
GH17J016438 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 48.5 +942.9 942855 7.2 FOXK2 SIN3A SP1 SREBF1 SIX5 FOXA1 MLX RBPJ POLR2A USF2 ENSG00000266651 SNORD49A SNORD49B SNORD65 piR-31623 piR-42162 piR-61388 ENSG00000266538 PIGL NCOR1
GH17J018087 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 38.7 -704.0 -704038 2.6 ZNF785 ZNF24 SP1 ZBTB40 SIX5 ZBTB6 MLX SMARCE1 RBPJ POLR2A DRG2 ZNF286B RAI1 SMCR8 LOC100419436 FOXO3B SMCR5 RPL13P12 ENSG00000265511 ACTG1P24
GH17J018313 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 24.5 -933.2 -933215 8.2 SIN3A ZBTB40 CTCF SREBF1 SIX5 POLR2A USF2 HDAC2 ATF1 FOS SMCR8 TOP3A DRG2 FOXO3B FLII ENSG00000262202 SHMT1 RPL13P12 TVP23B CCDC144B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL13P12 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL13P12 Gene

Genomic Locations for RPL13P12 Gene
chr17:17,383,355-17,384,063
(GRCh38/hg38)
Size:
709 bases
Orientation:
Minus strand
chr17:17,286,669-17,287,377
(GRCh37/hg19)
Size:
709 bases
Orientation:
Minus strand

Genomic View for RPL13P12 Gene

Genes around RPL13P12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13P12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13P12 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL13P12 Gene

Proteins for RPL13P12 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL13P12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13P12 Gene

Domains & Families for RPL13P12 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL13P12 Gene

Function for RPL13P12 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPL13P12 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13P12 Gene

Localization for RPL13P12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13P12 Gene

Pathways & Interactions for RPL13P12 Gene

PathCards logo

SuperPathways for RPL13P12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL13P12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13P12 Gene

Drugs & Compounds for RPL13P12 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL13P12 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPL13P12 Gene

(427) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13P12 Gene

No ASD Table

Relevant External Links for RPL13P12 Gene

GeneLoc Exon Structure for
RPL13P12
ECgene alternative splicing isoforms for
RPL13P12

Expression for RPL13P12 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13P12 Gene

mRNA expression in normal human tissues for RPL13P12 Gene
mRNA expression by GTEx for RPL13P12 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13P12 Gene:

RPL13P12
genes like me logo Genes that share expression patterns with RPL13P12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13P12 Gene

Orthologs for RPL13P12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPL13P12 Gene

Organism Taxonomy Gene Similarity Type Details
rainbow trout
(Oncorhynchus mykiss)
 Actinopterygii Omy.9053 32
sea squirt
(Ciona savignyi)
 Ascidiacea Cin.5220 32
sea squirt
(Ciona intestinalis)
 Ascidiacea Cin.5220 32
Species where no ortholog for RPL13P12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPL13P12 Gene

ENSEMBL:
Gene Tree for RPL13P12 (if available)
TreeFam:
Gene Tree for RPL13P12 (if available)

Paralogs for RPL13P12 Gene

No data available for Paralogs for RPL13P12 Gene

Variants for RPL13P12 Gene

Additional Variant Information for RPL13P12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13P12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13P12 Gene

Disorders for RPL13P12 Gene

Additional Disease Information for RPL13P12

Genetic Association Database
(GAD)

No disorders were found for RPL13P12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13P12 Gene

Publications for RPL13P12 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 56
  2. PRP19 transforms into a sensor of RPA-ssDNA after DNA damage and drives ATR activation via a ubiquitin-mediated circuitry. (PMID: 24332808) Maréchal A … Zou L (Molecular cell 2014) 3 56
  3. LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells. (PMID: 23443559) Fogeron ML … Lange BM (Nature communications 2013) 3 56
  4. A cohesin-RAD21 interactome. (PMID: 22145905) Panigrahi AK … Pati D (The Biochemical journal 2012) 3 56
  5. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett EJ … Harper JW (Cell 2010) 3 56

ExternalLinks

View latest publications for RPL13P12 gene in Mastermind

Products for RPL13P12 Gene

Sources for RPL13P12 Gene