Aliases for RPL13AP6 Gene

Aliases for RPL13AP6 Gene

  • Ribosomal Protein L13a Pseudogene 6 2 3 5
  • BA348N5.5 2 3
  • RPL13A_7_1096 3
  • RPL13AP6 5

External Ids for RPL13AP6 Gene

Previous GeneCards Identifiers for RPL13AP6 Gene

  • GC10U900520
  • GC10M112688
  • GC10M106325

Summaries for RPL13AP6 Gene

GeneCards Summary for RPL13AP6 Gene

RPL13AP6 (Ribosomal Protein L13a Pseudogene 6) is a Pseudogene.

Additional gene information for RPL13AP6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL13AP6 Gene

Genomics for RPL13AP6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL13AP6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J110943 Promoter/Enhancer 0.8 EPDnew Ensembl 0.4 -7.9 -7946 5.2 FOXA1 SCRT1 POLR2A MYC ZNF133 SHOC2 BBIP1 ADRA2A ENSG00000270589 RPL13AP6 MIR548E
GH10J110939 Enhancer 0.4 Ensembl 0.7 -2.6 -2646 1.4 CREB1 POLR2A ATF2 SHOC2 BBIP1 ADRA2A RPL13AP6 MIR548E
GH10J110965 Enhancer 0.7 Ensembl 0.3 -27.6 -27646 9 PRDM1 SP1 CEBPB ZNF316 YY1 ZKSCAN1 BCOR JUNB BATF ZNF366 SHOC2 ADRA2A BBIP1 ENSG00000270589 MIR548E RPL13AP6
GH10J110959 Enhancer 0.4 Ensembl 0.4 -22.4 -22445 1 ZBTB40 ADNP HNF4A ADRA2A RPL13AP6 MIR548E SHOC2
GH10J110972 Enhancer 0.5 Ensembl 0.3 -35.3 -35346 6 CEBPB ZNF316 CEBPG FEZF1 PRDM6 ZBTB33 MZF1 ADRA2A SHOC2 BBIP1 PDCD4 ENSG00000232470 MIR548E RPL13AP6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL13AP6 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the RPL13AP6 gene promoter:
  • AP-2rep
  • Cart-1
  • FOXI1
  • FOXJ2
  • FOXJ2 (long isoform)
  • GATA-1
  • HFH-1
  • HFH-3
  • HNF-3beta
  • HOXA5

Genomic Locations for RPL13AP6 Gene

Genomic Locations for RPL13AP6 Gene
chr10:110,936,603-110,937,255
(GRCh38/hg38)
Size:
653 bases
Orientation:
Minus strand
chr10:112,696,361-112,697,013
(GRCh37/hg19)
Size:
653 bases
Orientation:
Minus strand

Genomic View for RPL13AP6 Gene

Genes around RPL13AP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP6 Gene

Proteins for RPL13AP6 Gene

Post-translational modifications for RPL13AP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP6 Gene

Domains & Families for RPL13AP6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL13AP6 Gene

Function for RPL13AP6 Gene

Phenotypes From GWAS Catalog for RPL13AP6 Gene

Phenotypes for RPL13AP6 Gene

GenomeRNAi human phenotypes for RPL13AP6:
genes like me logo Genes that share phenotypes with RPL13AP6: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP6 Gene

Localization for RPL13AP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP6 Gene

Pathways & Interactions for RPL13AP6 Gene

PathCards logo

SuperPathways for RPL13AP6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL13AP6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL13AP6 Gene

Drugs & Compounds for RPL13AP6 Gene

No Compound Related Data Available

Transcripts for RPL13AP6 Gene

mRNA/cDNA for RPL13AP6 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP6 Gene

No ASD Table

Relevant External Links for RPL13AP6 Gene

GeneLoc Exon Structure for
RPL13AP6

Expression for RPL13AP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL13AP6 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPL13AP6

SOURCE GeneReport for Unigene cluster for RPL13AP6 Gene:

Hs.632083
genes like me logo Genes that share expression patterns with RPL13AP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP6 Gene

Orthologs for RPL13AP6 Gene

Evolution for RPL13AP6 Gene

ENSEMBL:
Gene Tree for RPL13AP6 (if available)
TreeFam:
Gene Tree for RPL13AP6 (if available)

No data available for Orthologs for RPL13AP6 Gene

Paralogs for RPL13AP6 Gene

No data available for Paralogs for RPL13AP6 Gene

Variants for RPL13AP6 Gene

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP6 Gene

Variant ID Type Subtype PubMed ID
dgv974n100 CNV loss 25217958
nsv1035602 CNV loss 25217958
nsv518667 CNV loss 19592680
nsv7211 OTHER inversion 18451855
nsv831985 CNV gain+loss 17160897
nsv948185 CNV duplication 23825009

Additional Variant Information for RPL13AP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPL13AP6 Gene

Disorders for RPL13AP6 Gene

Additional Disease Information for RPL13AP6

No disorders were found for RPL13AP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP6 Gene

Publications for RPL13AP6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

Products for RPL13AP6 Gene

Sources for RPL13AP6 Gene