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Aliases for RPL13AP5 Gene

Aliases for RPL13AP5 Gene

  • Ribosomal Protein L13a Pseudogene 5 2 3 5
  • RPL13A_8_1086 3
  • BA196N24.2 3

External Ids for RPL13AP5 Gene

Previous GeneCards Identifiers for RPL13AP5 Gene

  • GC10U900519
  • GC10P098502
  • GC10P098487
  • GC10P098510
  • GC10P092139

Summaries for RPL13AP5 Gene

GeneCards Summary for RPL13AP5 Gene

RPL13AP5 (Ribosomal Protein L13a Pseudogene 5) is a Pseudogene.

Additional gene information for RPL13AP5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP5 Gene

Genomics for RPL13AP5 Gene

GeneHancer (GH) Regulatory Elements for RPL13AP5 Gene

Promoters and enhancers for RPL13AP5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I096747 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -1.9 -1942 1.6 PKNOX1 SMAD1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 SMARCA5 GC10P096751 RPL13AP5 PIK3AP1 LCOR MIR607 MORN4 RNU6-1274P
GH10I097331 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 23.9 +583.4 583384 4.9 HDGF CLOCK FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B FRAT2 LOC105378448 EXOSC1 RPL13AP5 NPM1P26 R3HCC1L LOXL4 ENSG00000230928 TM9SF3 SLIT1
GH10I097318 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 15.1 +569.9 569912 4 CLOCK FOXA2 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF213 E2F8 FRAT1 RPL13AP5 ARHGAP19 NPM1P26 MORN4 SLIT1 EXOSC1 ENSG00000230928 LCOR LOXL4
GH10I096088 Promoter/Enhancer 1.6 Ensembl ENCODE 19 -660.4 -660419 2.2 PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ENTPD1-AS1 TCTN3 ZNF518A RPL13AP5 NPM1P26 CCNJ RNU6-271P LCOR TM9SF3 CC2D2B
GH10I097424 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 12.6 +676.7 676706 4.4 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF207 ZNF143 SP3 PGAM1 GC10M097416 LOC644215 RRP12 TM9SF3 MARVELD1 RPL13AP5 EXOSC1 LOXL4 GC10P097430
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL13AP5 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL13AP5 gene promoter:

Genomic Locations for RPL13AP5 Gene

Genomic Locations for RPL13AP5 Gene
chr10:96,750,266-96,750,923
(GRCh38/hg38)
Size:
658 bases
Orientation:
Plus strand
chr10:98,510,023-98,510,680
(GRCh37/hg19)

Genomic View for RPL13AP5 Gene

Genes around RPL13AP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP5 Gene

Proteins for RPL13AP5 Gene

Post-translational modifications for RPL13AP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP5 Gene

Domains & Families for RPL13AP5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP5 Gene

Function for RPL13AP5 Gene

Phenotypes From GWAS Catalog for RPL13AP5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP5 Gene

Localization for RPL13AP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP5 Gene

Pathways & Interactions for RPL13AP5 Gene

SuperPathways for RPL13AP5 Gene

No Data Available

Interacting Proteins for RPL13AP5 Gene

Gene Ontology (GO) - Biological Process for RPL13AP5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP5 Gene

Drugs & Compounds for RPL13AP5 Gene

No Compound Related Data Available

Transcripts for RPL13AP5 Gene

mRNA/cDNA for RPL13AP5 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP5 Gene

Ribosomal protein L13a pseudogene 5:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP5 Gene

No ASD Table

Relevant External Links for RPL13AP5 Gene

GeneLoc Exon Structure for
RPL13AP5
ECgene alternative splicing isoforms for
RPL13AP5

Expression for RPL13AP5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP5 Gene:

RPL13AP5

SOURCE GeneReport for Unigene cluster for RPL13AP5 Gene:

Hs.645344
genes like me logo Genes that share expression patterns with RPL13AP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP5 Gene

Orthologs for RPL13AP5 Gene

Evolution for RPL13AP5 Gene

ENSEMBL:
Gene Tree for RPL13AP5 (if available)
TreeFam:
Gene Tree for RPL13AP5 (if available)

No data available for Orthologs for RPL13AP5 Gene

Paralogs for RPL13AP5 Gene

No data available for Paralogs for RPL13AP5 Gene

Variants for RPL13AP5 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP5 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000856316 -- 96,749,460(+) C/T upstream_transcript_variant
rs1001384120 -- 96,750,155(+) G/A upstream_transcript_variant
rs1001541592 -- 96,749,625(+) T/C/G upstream_transcript_variant
rs1002313473 -- 96,748,846(+) G/T upstream_transcript_variant
rs1003603271 -- 96,751,000(+) C/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP5 Gene

Variant ID Type Subtype PubMed ID
nsv948153 CNV duplication 23825009
nsv930478 CNV deletion 23359205
nsv508601 CNV deletion 20534489
nsv1110852 OTHER inversion 24896259
nsv1053801 CNV gain 25217958
esv3577638 CNV gain 25503493

Additional Variant Information for RPL13AP5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13AP5 Gene

Disorders for RPL13AP5 Gene

Additional Disease Information for RPL13AP5

No disorders were found for RPL13AP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP5 Gene

Publications for RPL13AP5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C … Cox NJ (American journal of human genetics 2000) 44 58

Products for RPL13AP5 Gene

Sources for RPL13AP5 Gene

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