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Aliases for RPL13AP5 Gene

Aliases for RPL13AP5 Gene

  • Ribosomal Protein L13a Pseudogene 5 2 3 5
  • RPL13A_8_1086 3
  • BA196N24.2 3

External Ids for RPL13AP5 Gene

Previous GeneCards Identifiers for RPL13AP5 Gene

  • GC10U900519
  • GC10P098502
  • GC10P098487
  • GC10P098510
  • GC10P092139

Summaries for RPL13AP5 Gene

GeneCards Summary for RPL13AP5 Gene

RPL13AP5 (Ribosomal Protein L13a Pseudogene 5) is a Pseudogene.

Additional gene information for RPL13AP5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP5 Gene

Genomics for RPL13AP5 Gene

GeneHancer (GH) Regulatory Elements for RPL13AP5 Gene

Promoters and enhancers for RPL13AP5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J096747 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 600.7 -1.9 -1942 1.6 ZNF687 RELA CREM ZBED1 IKZF1 BACH1 IKZF2 TRIM22 PKNOX1 SOX13 GC10P096751 RPL13AP5 PIK3AP1 LCOR MIR607 MORN4 RNU6-1274P
GH10J096750 Promoter/Enhancer 0.7 Ensembl dbSUPER 600.7 +0.2 234 0.6 GC10P096751 RPL13AP5 PIK3AP1 MIR607 LCOR GC10M096752
GH10J097331 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 32.8 +583.4 583375 4.9 HDGF SP1 ZNF652 ZFX ELF3 CTCF MNT SIX5 ZNF148 NKRF ENSG00000225850 LOC105378448 FRAT2 EXOSC1 NPM1P26 R3HCC1L RPL13AP5 ENSG00000230928 LOXL4 LCOR
GH10J097421 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 21.8 +675.4 675417 7.4 SP1 ELF3 CTCF NKRF POLR2A MLLT1 ZNF384 ZNF687 AHR ZNF24 RRP12 PGAM1 GC10M097416 LOC644215 MMS19 EXOSC1 LCOR R3HCC1L TM9SF3 NPM1P26
GH10J096128 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 23 -620.0 -619965 4.2 ZNF652 SP1 ZFX ELF3 ZKSCAN8 MNT NKRF POLR2A MLLT1 ZNF121 ZNF518A GC10M096129 CCNJ NPM1P26 RPL13AP5 TCTN3 LCOR TM9SF3 PDLIM1 ENTPD1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL13AP5 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL13AP5 gene promoter:
  • AP-2alpha
  • AP-2alphaA
  • AP-2beta
  • AP-2gamma
  • AREB6
  • CREB
  • deltaCREB
  • GATA-1
  • GATA-2
  • YY1

Genomic Locations for RPL13AP5 Gene

Genomic Locations for RPL13AP5 Gene
chr10:96,750,266-96,750,923
(GRCh38/hg38)
Size:
658 bases
Orientation:
Plus strand
chr10:98,510,023-98,510,680
(GRCh37/hg19)
Size:
658 bases
Orientation:
Plus strand

Genomic View for RPL13AP5 Gene

Genes around RPL13AP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP5 Gene

Proteins for RPL13AP5 Gene

Post-translational modifications for RPL13AP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP5 Gene

Domains & Families for RPL13AP5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL13AP5 Gene

Function for RPL13AP5 Gene

Phenotypes From GWAS Catalog for RPL13AP5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP5 Gene

Localization for RPL13AP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP5 Gene

Pathways & Interactions for RPL13AP5 Gene

PathCards logo

SuperPathways for RPL13AP5 Gene

No Data Available

Interacting Proteins for RPL13AP5 Gene

Gene Ontology (GO) - Biological Process for RPL13AP5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP5 Gene

Drugs & Compounds for RPL13AP5 Gene

No Compound Related Data Available

Transcripts for RPL13AP5 Gene

mRNA/cDNA for RPL13AP5 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for RPL13AP5 Gene

Ribosomal protein L13a pseudogene 5:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP5 Gene

No ASD Table

Relevant External Links for RPL13AP5 Gene

GeneLoc Exon Structure for
RPL13AP5
ECgene alternative splicing isoforms for
RPL13AP5

Expression for RPL13AP5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP5 Gene:

RPL13AP5

SOURCE GeneReport for Unigene cluster for RPL13AP5 Gene:

Hs.645344
genes like me logo Genes that share expression patterns with RPL13AP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP5 Gene

Orthologs for RPL13AP5 Gene

Evolution for RPL13AP5 Gene

ENSEMBL:
Gene Tree for RPL13AP5 (if available)
TreeFam:
Gene Tree for RPL13AP5 (if available)

No data available for Orthologs for RPL13AP5 Gene

Paralogs for RPL13AP5 Gene

No data available for Paralogs for RPL13AP5 Gene

Variants for RPL13AP5 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP5 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000856316 -- 96,749,460(+) C/T upstream_transcript_variant
rs1001384120 -- 96,750,155(+) G/A upstream_transcript_variant
rs1001541592 -- 96,749,625(+) T/A/C/G upstream_transcript_variant
rs1002313473 -- 96,748,846(+) G/T upstream_transcript_variant
rs1003603271 -- 96,751,000(+) C/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP5 Gene

Variant ID Type Subtype PubMed ID
esv3577638 CNV gain 25503493
nsv1053801 CNV gain 25217958
nsv1110852 OTHER inversion 24896259
nsv508601 CNV deletion 20534489
nsv930478 CNV deletion 23359205
nsv948153 CNV duplication 23825009

Additional Variant Information for RPL13AP5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13AP5 Gene

Disorders for RPL13AP5 Gene

Additional Disease Information for RPL13AP5

No disorders were found for RPL13AP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP5 Gene

Publications for RPL13AP5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C … Cox NJ (American journal of human genetics 2000) 45 58

Products for RPL13AP5 Gene

Sources for RPL13AP5 Gene

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