Aliases for RPL13AP5 Gene

Aliases for RPL13AP5 Gene

  • Ribosomal Protein L13a Pseudogene 5 2 3 5
  • BA196N24.2 2 3
  • RPL13A_8_1086 3
  • RPL13AP5 5

External Ids for RPL13AP5 Gene

Previous GeneCards Identifiers for RPL13AP5 Gene

  • GC10U900519
  • GC10P098502
  • GC10P098487
  • GC10P098510
  • GC10P092139

Summaries for RPL13AP5 Gene

GeneCards Summary for RPL13AP5 Gene

RPL13AP5 (Ribosomal Protein L13a Pseudogene 5) is a Pseudogene.

Additional gene information for RPL13AP5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL13AP5 Gene

Genomics for RPL13AP5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL13AP5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J096747 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 600.7 -1.9 -1942 1.6 HNRNPL BACH1 STAT3 RELA TCF12 IKZF2 RCOR1 TRIM22 SOX6 PKNOX1 RPL13AP5 PIK3AP1 LCOR MIR607 MORN4 RNU6-1274P RF00026-163
GH10J096751 Enhancer 0.2 Ensembl 600.7 +0.8 835 0.2 RPL13AP5 lnc-PIK3AP1-2 piR-46238-002 PIK3AP1 MIR607 LCOR lnc-PIK3AP1-3
GH10J097421 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 34.4 +675.3 675317 7.2 SP1 CREB1 CTCF TEAD4 ZNF629 PRDM10 IKZF1 RCOR2 POLR2A JUND PGAM1 LOC644215 RRP12 MMS19 EXOSC1 LCOR R3HCC1L RPL13AP5 TM9SF3 LOXL4
GH10J096088 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 23.8 -660.4 -660382 2.2 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 REST ZNF629 TFE3 NFKBIZ ENTPD1-AS1 ZNF518A TCTN3 NPM1P26 CCNJ RPL13AP5 LCOR TM9SF3 RNU6-271P CC2D2B
GH10J097326 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 20 +582.4 582444 11.9 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 REST ZNF629 TFE3 SIX5 ENSG00000225850 EXOSC1 R3HCC1L NPM1P26 MARVELD1 LOXL4 RPL13AP5 TM9SF3 SLIT1 ARHGAP19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL13AP5 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the RPL13AP5 gene promoter:
  • AP-2alpha
  • AP-2alphaA
  • AP-2beta
  • AP-2gamma
  • AREB6
  • CREB
  • deltaCREB
  • GATA-1
  • GATA-2
  • YY1

Genomic Locations for RPL13AP5 Gene

Genomic Locations for RPL13AP5 Gene
chr10:96,750,266-96,750,923
(GRCh38/hg38)
Size:
658 bases
Orientation:
Plus strand
chr10:98,510,023-98,510,680
(GRCh37/hg19)
Size:
658 bases
Orientation:
Plus strand

Genomic View for RPL13AP5 Gene

Genes around RPL13AP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP5 Gene

Proteins for RPL13AP5 Gene

Post-translational modifications for RPL13AP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP5 Gene

Domains & Families for RPL13AP5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL13AP5 Gene

Function for RPL13AP5 Gene

Phenotypes From GWAS Catalog for RPL13AP5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP5 Gene

Localization for RPL13AP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP5 Gene

Pathways & Interactions for RPL13AP5 Gene

PathCards logo

SuperPathways for RPL13AP5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL13AP5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL13AP5 Gene

Drugs & Compounds for RPL13AP5 Gene

No Compound Related Data Available

Transcripts for RPL13AP5 Gene

mRNA/cDNA for RPL13AP5 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP5 Gene

No ASD Table

Relevant External Links for RPL13AP5 Gene

GeneLoc Exon Structure for
RPL13AP5

Expression for RPL13AP5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL13AP5 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPL13AP5

SOURCE GeneReport for Unigene cluster for RPL13AP5 Gene:

Hs.645344
genes like me logo Genes that share expression patterns with RPL13AP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP5 Gene

Orthologs for RPL13AP5 Gene

Evolution for RPL13AP5 Gene

ENSEMBL:
Gene Tree for RPL13AP5 (if available)
TreeFam:
Gene Tree for RPL13AP5 (if available)

No data available for Orthologs for RPL13AP5 Gene

Paralogs for RPL13AP5 Gene

No data available for Paralogs for RPL13AP5 Gene

Variants for RPL13AP5 Gene

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP5 Gene

Variant ID Type Subtype PubMed ID
esv3577638 CNV gain 25503493
nsv1053801 CNV gain 25217958
nsv1110852 OTHER inversion 24896259
nsv508601 CNV deletion 20534489
nsv930478 CNV deletion 23359205
nsv948153 CNV duplication 23825009

Additional Variant Information for RPL13AP5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPL13AP5 Gene

Disorders for RPL13AP5 Gene

Additional Disease Information for RPL13AP5

No disorders were found for RPL13AP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP5 Gene

Publications for RPL13AP5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C … Cox NJ (American journal of human genetics 2000) 41

Products for RPL13AP5 Gene

Sources for RPL13AP5 Gene