Aliases for RPL13AP3 Gene

Aliases for RPL13AP3 Gene

  • Ribosomal Protein L13a Pseudogene 3 2 3 5
  • Putative 60S Ribosomal Protein L13a Protein RPL13AP3 4
  • 60S Ribosomal Protein L13a Pseudogene 3 4
  • RPL13A_11_1370 3
  • RPL13AP3 5

External Ids for RPL13AP3 Gene

Previous GeneCards Identifiers for RPL13AP3 Gene

  • GC14U900553
  • GC14P055304
  • GC14P056232
  • GC14P036396

Summaries for RPL13AP3 Gene

GeneCards Summary for RPL13AP3 Gene

RPL13AP3 (Ribosomal Protein L13a Pseudogene 3) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include structural constituent of ribosome.

Additional gene information for RPL13AP3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL13AP3 Gene

Genomics for RPL13AP3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL13AP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J055766 Enhancer 0.2 ENCODE 606.5 +1.1 1119 1.4 RPL13AP3 lnc-KTN1-4 piR-50437-177 ENSG00000258784 KTN1 PELI2
GH14J055773 Enhancer 0.3 ENCODE 6.3 +8.1 8096 1.3 HNF4A RXRA RPL13AP3 piR-50437-177 lnc-KTN1-4 KTN1 PELI2
GH14J055771 Enhancer 0.2 Ensembl 6.3 +5.4 5424 0.4 RPL13AP3 lnc-KTN1-4 piR-50437-177 ENSG00000258784 KTN1 PELI2
GH14J055762 Enhancer 0.5 Ensembl 0.7 -3.6 -3576 1.2 ZIC2 IKZF2 RELB EBF1 ATF4 IKZF1 RPL13AP3 lnc-KTN1-4 lnc-KTN1-2 ENSG00000258784 KTN1 PELI2
GH14J055759 Enhancer 0.4 Ensembl ENCODE 0.4 -7.6 -7576 1.6 USF1 lnc-KTN1-2 RPL13AP3 lnc-KTN1-4 ENSG00000258784 KTN1 PELI2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL13AP3 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the RPL13AP3 gene promoter:
  • FOXC1
  • Oct-B1
  • oct-B2
  • oct-B3
  • POU2F1
  • POU2F1a
  • POU2F2
  • POU2F2 (Oct-2.1)
  • POU2F2B
  • POU2F2C

Genomic Locations for RPL13AP3 Gene

Genomic Locations for RPL13AP3 Gene
chr14:55,766,177-55,767,717
(GRCh38/hg38)
Size:
1,541 bases
Orientation:
Plus strand
chr14:56,232,895-56,234,435
(GRCh37/hg19)
Size:
1,541 bases
Orientation:
Plus strand

Genomic View for RPL13AP3 Gene

Genes around RPL13AP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP3 Gene

Proteins for RPL13AP3 Gene

  • Protein details for RPL13AP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NVV1-R13P3_HUMAN
    Recommended name:
    Putative 60S ribosomal protein L13a protein RPL13AP3
    Protein Accession:
    Q6NVV1

    Protein attributes for RPL13AP3 Gene

    Size:
    102 amino acids
    Molecular mass:
    12135 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPL13AP3 Gene

Post-translational modifications for RPL13AP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP3 Gene

Domains & Families for RPL13AP3 Gene

Protein Domains for RPL13AP3 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6NVV1

UniProtKB/Swiss-Prot:

R13P3_HUMAN :
  • Belongs to the universal ribosomal protein uL13 family.
Family:
  • Belongs to the universal ribosomal protein uL13 family.
genes like me logo Genes that share domains with RPL13AP3: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RPL13AP3 Gene

Function for RPL13AP3 Gene

Phenotypes From GWAS Catalog for RPL13AP3 Gene

Gene Ontology (GO) - Molecular Function for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome IEA --
genes like me logo Genes that share ontologies with RPL13AP3: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP3 Gene

Localization for RPL13AP3 Gene

Gene Ontology (GO) - Cellular Components for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus HDA 21630459
GO:0005840 ribosome IEA --
genes like me logo Genes that share ontologies with RPL13AP3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RPL13AP3 Gene

Pathways & Interactions for RPL13AP3 Gene

PathCards logo

SuperPathways for RPL13AP3 Gene

No Data Available

Interacting Proteins for RPL13AP3 Gene

Selected Interacting proteins: Q6NVV1-R13P3_HUMAN for RPL13AP3 Gene via IID

Symbol External ID(s) Details
ESR2

Gene Ontology (GO) - Biological Process for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IEA --
genes like me logo Genes that share ontologies with RPL13AP3: view

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP3 Gene

Drugs & Compounds for RPL13AP3 Gene

No Compound Related Data Available

Transcripts for RPL13AP3 Gene

mRNA/cDNA for RPL13AP3 Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP3 Gene

No ASD Table

Relevant External Links for RPL13AP3 Gene

GeneLoc Exon Structure for
RPL13AP3

Expression for RPL13AP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL13AP3 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP3 Gene

This gene is overexpressed in Testis (x46.6).

Protein differential expression in normal tissues from HIPED for RPL13AP3 Gene

This gene is overexpressed in Skin (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RPL13AP3 Gene



Protein tissue co-expression partners for RPL13AP3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPL13AP3

SOURCE GeneReport for Unigene cluster for RPL13AP3 Gene:

Hs.663461
genes like me logo Genes that share expression patterns with RPL13AP3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP3 Gene

Orthologs for RPL13AP3 Gene

Evolution for RPL13AP3 Gene

ENSEMBL:
Gene Tree for RPL13AP3 (if available)
TreeFam:
Gene Tree for RPL13AP3 (if available)

No data available for Orthologs for RPL13AP3 Gene

Paralogs for RPL13AP3 Gene

No data available for Paralogs for RPL13AP3 Gene

Variants for RPL13AP3 Gene

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP3 Gene

Variant ID Type Subtype PubMed ID
esv3634579 CNV gain 21293372
esv3892549 CNV gain 25118596
nsv832804 CNV gain 17160897
nsv983828 CNV duplication 23825009

Additional Variant Information for RPL13AP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPL13AP3 Gene

Disorders for RPL13AP3 Gene

Additional Disease Information for RPL13AP3

No disorders were found for RPL13AP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP3 Gene

Publications for RPL13AP3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Oncogenic functions of protein kinase D2 and D3 in regulating multiple cancer-related pathways in breast cancer. (PMID: 30652415) Liu Y … Chen L (Cancer medicine 2019) 3
  3. PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. (PMID: 31091453) Shami Shah A … Baskin JM (Cell reports 2019) 3
  4. FBXL13 directs the proteolysis of CEP192 to regulate centrosome homeostasis and cell migration. (PMID: 29348145) Fung E … D'Angiolella V (EMBO reports 2018) 3
  5. The HIV-1 Tat protein recruits a ubiquitin ligase to reorganize the 7SK snRNP for transcriptional activation. (PMID: 29845934) Faust TB … Frankel AD (eLife 2018) 3

Products for RPL13AP3 Gene

Sources for RPL13AP3 Gene