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Aliases for RPL13AP3 Gene

Aliases for RPL13AP3 Gene

  • Ribosomal Protein L13a Pseudogene 3 2 3 5
  • 60S Ribosomal Protein L13a Pseudogene 3 4
  • RPL13A_11_1370 3

External Ids for RPL13AP3 Gene

Previous GeneCards Identifiers for RPL13AP3 Gene

  • GC14U900553
  • GC14P055304
  • GC14P056232
  • GC14P036396

Summaries for RPL13AP3 Gene

GeneCards Summary for RPL13AP3 Gene

RPL13AP3 (Ribosomal Protein L13a Pseudogene 3) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include structural constituent of ribosome.

Additional gene information for RPL13AP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL13AP3 Gene

Genomics for RPL13AP3 Gene

GeneHancer (GH) Regulatory Elements for RPL13AP3 Gene

Promoters and enhancers for RPL13AP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I055766 Enhancer 0.2 ENCODE 556.6 +1.1 1119 1.4 RPL13AP3 GC14P055769 ENSG00000258784 LINC00520
GH14I055773 Enhancer 0.3 ENCODE 6.3 +8.1 8096 1.3 HNF4A RPL13AP3 GC14P055769 LINC00520
GH14I055779 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +14.3 14254 2.6 STAT1 MXI1 SMAD1 NFIB SOX6 TAL1 CEBPB CBFA2T3 EBF1 EP300 GC14P055769 RPL13AP3 LINC00520
GH14I055790 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +25.1 25052 1.8 ATF4 SOX6 JUN CEBPB CEBPG EP300 NR2F2 TBPL2 LINC00520 GC14P055769 RPL13AP3
GH14I055794 Enhancer 0.7 ENCODE dbSUPER 0.3 +28.7 28721 0.2 FOSL1 JUND JUN ZSCAN5C STAT3 FOSL2 FOS LINC00520 PELI2 GC14P055769 RPL13AP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL13AP3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL13AP3 gene promoter:

Genomic Locations for RPL13AP3 Gene

Genomic Locations for RPL13AP3 Gene
chr14:55,766,177-55,767,717
(GRCh38/hg38)
Size:
1,541 bases
Orientation:
Plus strand
chr14:56,232,895-56,234,435
(GRCh37/hg19)

Genomic View for RPL13AP3 Gene

Genes around RPL13AP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP3 Gene

Proteins for RPL13AP3 Gene

  • Protein details for RPL13AP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NVV1-R13P3_HUMAN
    Recommended name:
    Putative 60S ribosomal protein L13a protein RPL13AP3
    Protein Accession:
    Q6NVV1

    Protein attributes for RPL13AP3 Gene

    Size:
    102 amino acids
    Molecular mass:
    12135 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPL13AP3 Gene

Post-translational modifications for RPL13AP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP3 Gene

Domains & Families for RPL13AP3 Gene

Protein Domains for RPL13AP3 Gene

Graphical View of Domain Structure for InterPro Entry

Q6NVV1

UniProtKB/Swiss-Prot:

R13P3_HUMAN :
  • Belongs to the universal ribosomal protein uL13 family.
Family:
  • Belongs to the universal ribosomal protein uL13 family.
genes like me logo Genes that share domains with RPL13AP3: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for RPL13AP3 Gene

Function for RPL13AP3 Gene

Phenotypes From GWAS Catalog for RPL13AP3 Gene

Gene Ontology (GO) - Molecular Function for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003729 mRNA binding IBA --
GO:0003735 structural constituent of ribosome IBA --
genes like me logo Genes that share ontologies with RPL13AP3: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP3 Gene

Localization for RPL13AP3 Gene

Gene Ontology (GO) - Cellular Components for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus HDA 21630459
GO:0022625 cytosolic large ribosomal subunit IBA --
GO:0070062 extracellular exosome HDA 23376485
genes like me logo Genes that share ontologies with RPL13AP3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RPL13AP3 Gene

Pathways & Interactions for RPL13AP3 Gene

SuperPathways for RPL13AP3 Gene

No Data Available

Interacting Proteins for RPL13AP3 Gene

Selected Interacting proteins: Q6NVV1-R13P3_HUMAN for RPL13AP3 Gene via IID

Symbol External ID(s) Details
ESR2

Gene Ontology (GO) - Biological Process for RPL13AP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IBA --
genes like me logo Genes that share ontologies with RPL13AP3: view

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP3 Gene

Drugs & Compounds for RPL13AP3 Gene

No Compound Related Data Available

Transcripts for RPL13AP3 Gene

mRNA/cDNA for RPL13AP3 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL13AP3 Gene

Ribosomal protein L13a pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP3 Gene

No ASD Table

Relevant External Links for RPL13AP3 Gene

GeneLoc Exon Structure for
RPL13AP3
ECgene alternative splicing isoforms for
RPL13AP3

Expression for RPL13AP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP3 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP3 Gene

This gene is overexpressed in Testis (x46.6).

Protein differential expression in normal tissues from HIPED for RPL13AP3 Gene

This gene is overexpressed in Skin (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RPL13AP3 Gene



Protein tissue co-expression partners for RPL13AP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP3 Gene:

RPL13AP3

SOURCE GeneReport for Unigene cluster for RPL13AP3 Gene:

Hs.663461
genes like me logo Genes that share expression patterns with RPL13AP3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP3 Gene

Orthologs for RPL13AP3 Gene

Evolution for RPL13AP3 Gene

ENSEMBL:
Gene Tree for RPL13AP3 (if available)
TreeFam:
Gene Tree for RPL13AP3 (if available)

No data available for Orthologs for RPL13AP3 Gene

Paralogs for RPL13AP3 Gene

No data available for Paralogs for RPL13AP3 Gene

Variants for RPL13AP3 Gene

Sequence variations from dbSNP and Humsavar for RPL13AP3 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1001120451 -- 55,768,179(+) A/G downstream_transcript_variant
rs1001910857 -- 55,767,946(+) C/T downstream_transcript_variant
rs1002455403 -- 55,766,579(+) AAA/A non_coding_transcript_variant
rs1002639121 -- 55,764,841(+) A/C upstream_transcript_variant
rs1003601545 -- 55,765,586(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP3 Gene

Variant ID Type Subtype PubMed ID
nsv983828 CNV duplication 23825009
nsv832804 CNV gain 17160897
esv3892549 CNV gain 25118596
esv3634579 CNV gain 21293372

Additional Variant Information for RPL13AP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL13AP3 Gene

Disorders for RPL13AP3 Gene

Additional Disease Information for RPL13AP3

No disorders were found for RPL13AP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP3 Gene

Publications for RPL13AP3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M … Moll S (Journal of proteomics 2013) 3 58
  3. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3 58
  4. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S … Oliva R (Proteomics 2011) 3 58
  5. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D … Mitchell GF (BMC medical genetics 2007) 44 58

Products for RPL13AP3 Gene

Sources for RPL13AP3 Gene

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