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Aliases for RPL13AP3 Gene
Aliases for RPL13AP3 Gene
External Ids for RPL13AP3 Gene
- HGNC: 23539
- Entrez Gene: 645683
- Ensembl: ENSG00000177350
- UniProtKB: Q6NVV1
Previous GeneCards Identifiers for RPL13AP3 Gene
- GC14U900553
- GC14P055304
- GC14P056232
- GC14P036396
Summaries for RPL13AP3 Gene
GeneCards Summary for RPL13AP3 Gene
RPL13AP3 (Ribosomal Protein L13a Pseudogene 3) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include structural constituent of ribosome.
Additional gene information for RPL13AP3 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL13AP3 Gene
Genomics for RPL13AP3 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for RPL13AP3 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH14J055766 | Enhancer | 0.2 | ENCODE | 606.5 | +1.1 | 1119 | 1.4 | RPL13AP3 lnc-KTN1-4 piR-50437-177 ENSG00000258784 KTN1 PELI2 | ||
| GH14J055773 | Enhancer | 0.3 | ENCODE | 6.3 | +8.1 | 8096 | 1.3 | HNF4A RXRA | RPL13AP3 piR-50437-177 lnc-KTN1-4 KTN1 PELI2 | |
| GH14J055771 | Enhancer | 0.2 | Ensembl | 6.3 | +5.4 | 5424 | 0.4 | RPL13AP3 lnc-KTN1-4 piR-50437-177 ENSG00000258784 KTN1 PELI2 | ||
| GH14J055762 | Enhancer | 0.5 | Ensembl | 0.7 | -3.6 | -3576 | 1.2 | ZIC2 IKZF2 RELB EBF1 ATF4 IKZF1 | RPL13AP3 lnc-KTN1-4 lnc-KTN1-2 ENSG00000258784 KTN1 PELI2 | |
| GH14J055759 | Enhancer | 0.4 | Ensembl ENCODE | 0.4 | -7.6 | -7576 | 1.6 | USF1 | lnc-KTN1-2 RPL13AP3 lnc-KTN1-4 ENSG00000258784 KTN1 PELI2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around RPL13AP3 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the RPL13AP3 gene promoter:
-
- FOXC1
- Oct-B1
- oct-B2
- oct-B3
- POU2F1
- POU2F1a
- POU2F2
- POU2F2 (Oct-2.1)
- POU2F2B
- POU2F2C
Genomic Locations for RPL13AP3 Gene
Genomic Locations for RPL13AP3 Gene
- chr14:55,766,177-55,767,717
- (GRCh38/hg38)
- Size:
- 1,541 bases
- Orientation:
- Plus strand
- chr14:56,232,895-56,234,435
- (GRCh37/hg19)
- Size:
- 1,541 bases
- Orientation:
- Plus strand
Genomic View for RPL13AP3 Gene
Genes around RPL13AP3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 14q22.3 by HGNC
- 14q22.3 by Entrez Gene
- 14q22.3 by Ensembl
RPL13AP3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RPL13AP3 Gene
Proteins for RPL13AP3 Gene
-
Protein details for RPL13AP3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q6NVV1-R13P3_HUMAN
- Recommended name:
- Putative 60S ribosomal protein L13a protein RPL13AP3
- Protein Accession:
- Q6NVV1
Protein attributes for RPL13AP3 Gene
- Size:
- 102 amino acids
- Molecular mass:
- 12135 Da
- Quaternary structure:
- No Data Available
Protein Expression for RPL13AP3 Gene
Post-translational modifications for RPL13AP3 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RPL13AP3
- Origene Custom Protein Services for RPL13AP3
No data available for DME Specific Peptides for RPL13AP3 Gene
Domains & Families for RPL13AP3 Gene
Protein Domains for RPL13AP3 Gene
- InterPro:
- ProtoNet:
Graphical View of Domain Structure for InterPro Entry
Q6NVV1- Family:
-
- Belongs to the universal ribosomal protein uL13 family.
No data available for Gene Families and Suggested Antigen Peptide Sequences for RPL13AP3 Gene
Function for RPL13AP3 Gene
Phenotypes From GWAS Catalog for RPL13AP3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003735 | structural constituent of ribosome | IEA | -- |
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for RPL13AP3 - Select products 50% OFF >
- * RPL13AP3 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for RPL13AP3
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for RPL13AP3 - Select products 50% OFF >
- * RPL13AP3 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP3 Gene
Localization for RPL13AP3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | HDA | 21630459 |
| GO:0005840 | ribosome | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RPL13AP3 Gene
Pathways & Interactions for RPL13AP3 Gene
Interacting Proteins for RPL13AP3 Gene
| Symbol | External ID(s) | Details |
|---|---|---|
| ESR2 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006412 | translation | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for RPL13AP3 Gene
Transcripts for RPL13AP3 Gene
mRNA/cDNA for RPL13AP3 Gene
- 1 NCBI additional mRNA sequence :
- 2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000487479 614 nts (view in UCSC)
- ENST00000494676 1473 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for RPL13AP3 - Select products 50% OFF >
- * RPL13AP3 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for RPL13AP3
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for RPL13AP3 - Select products 50% OFF >
- * RPL13AP3 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for RPL13AP3 Gene
- GeneLoc Exon Structure for
- RPL13AP3
Expression for RPL13AP3 Gene
mRNA differential expression in normal tissues according to GTEx for RPL13AP3 Gene
This gene is overexpressed in Testis (x46.6).
This gene is overexpressed in Skin (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RPL13AP3 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPL13AP3
SOURCE GeneReport for Unigene cluster for RPL13AP3 Gene:
Hs.663461Primer Products
-
OriGene qPCR primer pairs for RPL13AP3
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP3 Gene
Orthologs for RPL13AP3 Gene
No data available for Orthologs for RPL13AP3 Gene
Paralogs for RPL13AP3 Gene
No data available for Paralogs for RPL13AP3 Gene
Variants for RPL13AP3 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3634579 | CNV | gain | 21293372 |
| esv3892549 | CNV | gain | 25118596 |
| nsv832804 | CNV | gain | 17160897 |
| nsv983828 | CNV | duplication | 23825009 |
Additional Variant Information for RPL13AP3 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RPL13AP3
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPL13AP3 Gene
Disorders for RPL13AP3 Gene
Additional Disease Information for RPL13AP3
- Genetic Association Database
- (GAD)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for RPL13AP3 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP3 Gene
Publications for RPL13AP3 Gene
- Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
- Oncogenic functions of protein kinase D2 and D3 in regulating multiple cancer-related pathways in breast cancer. (PMID: 30652415) Liu Y … Chen L (Cancer medicine 2019) 3
- PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. (PMID: 31091453) Shami Shah A … Baskin JM (Cell reports 2019) 3
- FBXL13 directs the proteolysis of CEP192 to regulate centrosome homeostasis and cell migration. (PMID: 29348145) Fung E … D'Angiolella V (EMBO reports 2018) 3
- The HIV-1 Tat protein recruits a ubiquitin ligase to reorganize the 7SK snRNP for transcriptional activation. (PMID: 29845934) Faust TB … Frankel AD (eLife 2018) 3
ExternalLinks
Products for RPL13AP3 Gene
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RPL13AP3
- Origene Custom Protein Services for RPL13AP3
- Browse OriGene Inhibitory RNA Products For RPL13AP3
- OriGene qPCR primer pairs for RPL13AP3
- Browse CRISPR knockouts for RPL13AP3
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RPL13AP3
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for RPL13AP3
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for RPL13AP3
- Search GeneCopoeia for miRNA 3'UTR Target clone products for RPL13AP3
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for RPL13AP3
Sources for RPL13AP3 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB