Aliases for RPL13AP17 Gene

Aliases for RPL13AP17 Gene

  • Ribosomal Protein L13a Pseudogene 17 2 3 5
  • RPL13A_6_816 3

External Ids for RPL13AP17 Gene

Previous GeneCards Identifiers for RPL13AP17 Gene

  • GC07P077815
  • GC07P077976
  • GC07P072578

Summaries for RPL13AP17 Gene

GeneCards Summary for RPL13AP17 Gene

RPL13AP17 (Ribosomal Protein L13a Pseudogene 17) is a Pseudogene.

Additional gene information for RPL13AP17 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL13AP17 Gene

Genomics for RPL13AP17 Gene

GeneHancer (GH) Regulatory Elements for RPL13AP17 Gene

Promoters and enhancers for RPL13AP17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J078326 Enhancer 0.7 Ensembl ENCODE 0.4 -20.2 -20161 1.3 JUND REST FOS POLR2A TAF1 CEBPB STAT3 RPL13AP17 lnc-TMEM60-4 RF00017-6408
GH07J078349 Enhancer 0.3 Ensembl 0.7 +2.9 2859 1.2 HLF RPL13AP17 lnc-PHTF2-4 piR-45605-019 RF00017-6408
GH07J078351 Enhancer 0.3 Ensembl 0.7 +4.3 4259 0.4 FOXA1 RPL13AP17 lnc-PHTF2-4 piR-45605-019 RF00017-6408
GH07J078278 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.2 -67.8 -67841 1.8 JUND FOS JUN POLR2A TAF1 RPL13AP17 lnc-TMEM60-4 RF00017-6408
GH07J078300 Enhancer 0.6 Ensembl ENCODE 0.3 -45.6 -45643 2.2 REST JUND POLR2A SIN3A TAF1 RPL13AP17 lnc-TMEM60-4 RF00017-6408
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL13AP17 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL13AP17 gene promoter:
  • C/EBPbeta
  • FOXO4
  • NF-E2
  • NF-E2 p45
  • Pax-2
  • Pax-2a
  • S8
  • ZIC2

Genomic Locations for RPL13AP17 Gene

Genomic Locations for RPL13AP17 Gene
chr7:78,347,142-78,359,458
(GRCh38/hg38)
Size:
12,317 bases
Orientation:
Plus strand
chr7:77,976,459-77,988,775
(GRCh37/hg19)
Size:
12,317 bases
Orientation:
Plus strand

Genomic View for RPL13AP17 Gene

Genes around RPL13AP17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP17 Gene

Proteins for RPL13AP17 Gene

Post-translational modifications for RPL13AP17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP17 Gene

Domains & Families for RPL13AP17 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL13AP17 Gene

Function for RPL13AP17 Gene

Phenotypes From GWAS Catalog for RPL13AP17 Gene

Phenotypes for RPL13AP17 Gene

genes like me logo Genes that share phenotypes with RPL13AP17: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP17 Gene

Localization for RPL13AP17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP17 Gene

Pathways & Interactions for RPL13AP17 Gene

PathCards logo

SuperPathways for RPL13AP17 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPL13AP17 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL13AP17 Gene

Drugs & Compounds for RPL13AP17 Gene

No Compound Related Data Available

Transcripts for RPL13AP17 Gene

mRNA/cDNA for RPL13AP17 Gene

1 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP17 Gene

No ASD Table

Relevant External Links for RPL13AP17 Gene

GeneLoc Exon Structure for
RPL13AP17

Expression for RPL13AP17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL13AP17 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP17 Gene

This gene is overexpressed in Lung (x34.5) and Artery - Tibial (x5.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPL13AP17

SOURCE GeneReport for Unigene cluster for RPL13AP17 Gene:

Hs.568045
genes like me logo Genes that share expression patterns with RPL13AP17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP17 Gene

Orthologs for RPL13AP17 Gene

Evolution for RPL13AP17 Gene

ENSEMBL:
Gene Tree for RPL13AP17 (if available)
TreeFam:
Gene Tree for RPL13AP17 (if available)

No data available for Orthologs for RPL13AP17 Gene

Paralogs for RPL13AP17 Gene

No data available for Paralogs for RPL13AP17 Gene

Variants for RPL13AP17 Gene

Structural Variations from Database of Genomic Variants (DGV) for RPL13AP17 Gene

Variant ID Type Subtype PubMed ID
esv3613815 CNV gain 21293372
nsv1022764 CNV loss 25217958
nsv607654 CNV gain 21841781

Additional Variant Information for RPL13AP17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPL13AP17 Gene

Disorders for RPL13AP17 Gene

Additional Disease Information for RPL13AP17

No disorders were found for RPL13AP17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP17 Gene

Publications for RPL13AP17 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 54
  3. Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women. (PMID: 20966902) Croteau-Chonka DC … Mohlke KL (Obesity (Silver Spring, Md.) 2011) 3 54
  4. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 41 54
  5. Noncanonical function of glutamyl-prolyl-tRNA synthetase: gene-specific silencing of translation. (PMID: 15479637) Sampath P … Fox PL (Cell 2004) 3 54

Products for RPL13AP17 Gene

Sources for RPL13AP17 Gene