Aliases for RPL13AP11 Gene

Aliases for RPL13AP11 Gene

  • Ribosomal Protein L13a Pseudogene 11 2 3
  • Ribosomal Protein L13a (RPL13A) Pseudogene 5
  • RPL13A_1_152 3
  • AL391822.1 5

External Ids for RPL13AP11 Gene

Previous GeneCards Identifiers for RPL13AP11 Gene

  • GC01U902378
  • GC01P204916

Summaries for RPL13AP11 Gene

GeneCards Summary for RPL13AP11 Gene

RPL13AP11 (Ribosomal Protein L13a Pseudogene 11) is a Pseudogene.

Additional gene information for RPL13AP11 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL13AP11 Gene

Genomics for RPL13AP11 Gene

GeneHancer (GH) Regulatory Elements for RPL13AP11 Gene

Promoters and enhancers for RPL13AP11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J204945 Enhancer 0.6 Ensembl dbSUPER 750.6 -1.0 -1006 2.4 RFX1 SOX6 BMI1 TAL1 RPL13AP11 lnc-CNTN2-4 piR-57138-015 NFASC
GH01J205120 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10.9 +175.3 175256 3.1 E2F8 FOXK2 ZNF785 SIN3A ZNF24 SP1 ZBTB40 CTCF SIX5 ZBTB6 RBBP5 lnc-DSTYK-2 lnc-CNTN2-7 MDM4 PPP1R15B ELK4 TMCC2 DSTYK CNTN2 NFASC
GH01J205210 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10.9 +264.6 264594 3.6 ZNF785 SIN3A SP1 ZBTB40 SIX5 ZBTB6 RBPJ POLR2A CTBP1 CREB1 DSTYK MDM4 ELK4 PPP1R15B RBBP5 TMCC2 NFASC CNTN2 NUCKS1 RPL13AP11
GH01J204927 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE dbSUPER 0.4 -17.5 -17506 3.8 ZIC2 NFE2 SCRT2 OSR2 ZFHX2 GLIS1 PRDM10 KLF1 CBFA2T3 NFASC piR-57138-015 RPL13AP11
GH01J204941 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -5.3 -5306 2.2 ZNF24 CTCF MYC L3MBTL2 MAX RAD21 ZNF384 REST TRIM22 ZNF143 CNTN2 NFASC LRRN2 LEMD1 RPL13AP11 piR-57138-015
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL13AP11 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL13AP11 Gene

Genomic Locations for RPL13AP11 Gene
chr1:204,946,607-204,947,169
(GRCh38/hg38)
Size:
563 bases
Orientation:
Plus strand
chr1:204,915,735-204,916,297
(GRCh37/hg19)
Size:
563 bases
Orientation:
Plus strand

Genomic View for RPL13AP11 Gene

Genes around RPL13AP11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL13AP11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL13AP11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL13AP11 Gene

Proteins for RPL13AP11 Gene

Post-translational modifications for RPL13AP11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL13AP11 Gene

Domains & Families for RPL13AP11 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL13AP11 Gene

Function for RPL13AP11 Gene

Phenotypes From GWAS Catalog for RPL13AP11 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL13AP11 Gene

Localization for RPL13AP11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL13AP11 Gene

Pathways & Interactions for RPL13AP11 Gene

PathCards logo

SuperPathways for RPL13AP11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL13AP11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL13AP11 Gene

Drugs & Compounds for RPL13AP11 Gene

No Compound Related Data Available

Transcripts for RPL13AP11 Gene

mRNA/cDNA for RPL13AP11 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL13AP11 Gene

No ASD Table

Relevant External Links for RPL13AP11 Gene

GeneLoc Exon Structure for
RPL13AP11
ECgene alternative splicing isoforms for
RPL13AP11

Expression for RPL13AP11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL13AP11 Gene

mRNA differential expression in normal tissues according to GTEx for RPL13AP11 Gene

This gene is overexpressed in Kidney - Cortex (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RPL13AP11 Gene:

RPL13AP11
genes like me logo Genes that share expression patterns with RPL13AP11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL13AP11 Gene

Orthologs for RPL13AP11 Gene

Evolution for RPL13AP11 Gene

ENSEMBL:
Gene Tree for RPL13AP11 (if available)
TreeFam:
Gene Tree for RPL13AP11 (if available)

No data available for Orthologs for RPL13AP11 Gene

Paralogs for RPL13AP11 Gene

No data available for Paralogs for RPL13AP11 Gene

Variants for RPL13AP11 Gene

Additional Variant Information for RPL13AP11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL13AP11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL13AP11 Gene

Disorders for RPL13AP11 Gene

Additional Disease Information for RPL13AP11

Genetic Association Database
(GAD)

No disorders were found for RPL13AP11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL13AP11 Gene

Publications for RPL13AP11 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 56

No data available for External Links for RPL13AP11 Gene

Products for RPL13AP11 Gene

Sources for RPL13AP11 Gene