Aliases for RPL12P42 Gene

Aliases for RPL12P42 Gene

  • Ribosomal Protein L12 Pseudogene 42 2 3 5
  • RPL12_15_1630 3
  • RPL12P42 5

External Ids for RPL12P42 Gene

Previous GeneCards Identifiers for RPL12P42 Gene

  • GC19M013134
  • GC19M013269

Summaries for RPL12P42 Gene

GeneCards Summary for RPL12P42 Gene

RPL12P42 (Ribosomal Protein L12 Pseudogene 42) is a Pseudogene.

Additional gene information for RPL12P42 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL12P42 Gene

Genomics for RPL12P42 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL12P42 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J012994 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.2 +162.1 162134 4.7 ARHGAP35 HNRNPL ZBTB33 IKZF1 ZNF692 LARP7 MTA2 ZIC2 ZSCAN4 RBFOX2 NFIX ZNF20 RNASEH2A DCAF15 TRMT1 ZNF136 ZNF44 RPL28P5 ZNF799 ZNF490
GH19J013000 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 4.4 +156.9 156934 3.4 HNRNPL EZH2 ZBTB17 BCOR HIC1 ZNF366 ZFX ZMYM3 KDM1A ZFP36 MAST1 GCDH MAN2B1 RPL12P42 STX10 TNPO2 ZNF490 NFIX LOC107985286 LYL1
GH19J013148 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +5.5 5482 10.8 ARHGAP35 CEBPG SP1 HNRNPL CREB1 GATAD2A CTCF ZBTB33 ATF7 TEAD4 STX10 ENSG00000267598 ENSG00000287296 IER2 MN297565 CCDC130 ZNF136 TRMT1 ZNF44 ZNF564
GH19J013160 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -8.4 -8421 13.8 SP1 HNRNPL CREB1 GATAD2A ZBTB33 PRDM10 ZNF629 REST TFE3 LEF1 CCDC130 ZNF44 ZNF791 ZNF799 ZNF442 ZNF564 WDR83OS TRIR DCAF15 MRI1
GH19J012991 Enhancer 0.2 CraniofacialAtlas 4.4 +168.6 168587 0.2 RPL12P42 NFIX piR-50443-196 DAND5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL12P42 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL12P42 Gene

Genomic Locations for RPL12P42 Gene
chr19:13,157,910-13,158,874
(GRCh38/hg38)
Size:
965 bases
Orientation:
Minus strand
chr19:13,268,724-13,269,688
(GRCh37/hg19)
Size:
965 bases
Orientation:
Minus strand

Genomic View for RPL12P42 Gene

Genes around RPL12P42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL12P42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL12P42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL12P42 Gene

Proteins for RPL12P42 Gene

Post-translational modifications for RPL12P42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL12P42 Gene

Domains & Families for RPL12P42 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL12P42 Gene

Function for RPL12P42 Gene

Phenotypes From GWAS Catalog for RPL12P42 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL12P42 Gene

Localization for RPL12P42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL12P42 Gene

Pathways & Interactions for RPL12P42 Gene

PathCards logo

SuperPathways for RPL12P42 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL12P42 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL12P42 Gene

Drugs & Compounds for RPL12P42 Gene

No Compound Related Data Available

Transcripts for RPL12P42 Gene

mRNA/cDNA for RPL12P42 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL12P42 Gene

No ASD Table

Relevant External Links for RPL12P42 Gene

GeneLoc Exon Structure for
RPL12P42

Expression for RPL12P42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL12P42 Gene

mRNA differential expression in normal tissues according to GTEx for RPL12P42 Gene

This gene is overexpressed in Testis (x4.5) and Whole Blood (x4.0).
genes like me logo Genes that share expression patterns with RPL12P42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL12P42 Gene

Orthologs for RPL12P42 Gene

Evolution for RPL12P42 Gene

ENSEMBL:
Gene Tree for RPL12P42 (if available)
TreeFam:
Gene Tree for RPL12P42 (if available)

No data available for Orthologs for RPL12P42 Gene

Paralogs for RPL12P42 Gene

No data available for Paralogs for RPL12P42 Gene

Variants for RPL12P42 Gene

Additional Variant Information for RPL12P42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL12P42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL12P42 Gene

Disorders for RPL12P42 Gene

No disorders were found for RPL12P42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL12P42 Gene

Publications for RPL12P42 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPL12P42 Gene

Products for RPL12P42 Gene

Sources for RPL12P42 Gene