Aliases for RPL12P4 Gene

Aliases for RPL12P4 Gene

  • Ribosomal Protein L12 Pseudogene 4 2 3 5
  • RPL12_23_1714 3
  • DJ800C24.1 3

External Ids for RPL12P4 Gene

Previous GeneCards Identifiers for RPL12P4 Gene

  • GC20U990079
  • GC20P054329
  • GC20P054376
  • GC20P053124
  • GC20P053691
  • GC20P050437

Summaries for RPL12P4 Gene

GeneCards Summary for RPL12P4 Gene

RPL12P4 (Ribosomal Protein L12 Pseudogene 4) is a Pseudogene.

Additional gene information for RPL12P4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL12P4 Gene

Genomics for RPL12P4 Gene

GeneHancer (GH) Regulatory Elements for RPL12P4 Gene

Promoters and enhancers for RPL12P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J055074 Promoter 0.4 Ensembl 500.7 +0.2 245 0.4 CREB1 RPL12P4 L13714-290
GH20J054221 Enhancer 0.9 Ensembl ENCODE 10.2 -852.5 -852548 4.8 CTCF POLR2G RAD21 FOXA2 SMC3 NFXL1 ZBTB33 RBM22 JUND FOSL2 CYP24A1 RPL12P4 DOK5 ENSG00000286229 PFDN4
GH20J054218 Enhancer 0.5 Ensembl 12 -855.9 -855855 1.4 NFXL1 SRSF4 ZFP64 ATF3 ETV6 ZNF184 ZBTB20 RPL12P4 CYP24A1 ENSG00000286229 PFDN4
GH20J055103 Enhancer 1.1 Ensembl ENCODE 0.3 +28.9 28935 0.2 ZBTB11 HES1 MYC CTBP1 TAF9B MIER1 HDAC3 NCOR1 RELA MBD2 L13714-290 RPL12P4
GH20J055094 Enhancer 0.9 Ensembl 0.4 +19.7 19745 0.2 AFF1 TARDBP MYC CTBP1 NFRKB TAF9B MIER1 HDAC3 NCOR1 ZNF316 L13714-290 RPL12P4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL12P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL12P4 Gene

Genomic Locations for RPL12P4 Gene
chr20:55,074,556-55,075,178
(GRCh38/hg38)
Size:
623 bases
Orientation:
Plus strand
chr20:53,691,095-53,691,717
(GRCh37/hg19)
Size:
623 bases
Orientation:
Plus strand

Genomic View for RPL12P4 Gene

Genes around RPL12P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL12P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL12P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL12P4 Gene

Proteins for RPL12P4 Gene

Post-translational modifications for RPL12P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL12P4 Gene

Domains & Families for RPL12P4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL12P4 Gene

Function for RPL12P4 Gene

Phenotypes From GWAS Catalog for RPL12P4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL12P4 Gene

Localization for RPL12P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL12P4 Gene

Pathways & Interactions for RPL12P4 Gene

PathCards logo

SuperPathways for RPL12P4 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPL12P4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL12P4 Gene

Drugs & Compounds for RPL12P4 Gene

No Compound Related Data Available

Transcripts for RPL12P4 Gene

mRNA/cDNA for RPL12P4 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL12P4 Gene

No ASD Table

Relevant External Links for RPL12P4 Gene

GeneLoc Exon Structure for
RPL12P4

Expression for RPL12P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL12P4 Gene

genes like me logo Genes that share expression patterns with RPL12P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL12P4 Gene

Orthologs for RPL12P4 Gene

Evolution for RPL12P4 Gene

ENSEMBL:
Gene Tree for RPL12P4 (if available)
TreeFam:
Gene Tree for RPL12P4 (if available)

No data available for Orthologs for RPL12P4 Gene

Paralogs for RPL12P4 Gene

No data available for Paralogs for RPL12P4 Gene

Variants for RPL12P4 Gene

Additional Variant Information for RPL12P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL12P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL12P4 Gene

Disorders for RPL12P4 Gene

Additional Disease Information for RPL12P4

Genetic Association Database
(GAD)

No disorders were found for RPL12P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL12P4 Gene

Publications for RPL12P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54
  2. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins DE … van den Oord EJ (Molecular psychiatry 2011) 41 54
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 41 54
  4. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 41 54

Products for RPL12P4 Gene

Sources for RPL12P4 Gene