Aliases for RPARP-AS1 Gene

Subcategory (RNA class) for RPARP-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for RPARP-AS1 Gene

  • RPARP Antisense RNA 1 2 3 5
  • RPARP-AS1 2 5 165
  • NONHSAG006756.2 91
  • HSALNG0080293 164

External Ids for RPARP-AS1 Gene

Previous GeneCards Identifiers for RPARP-AS1 Gene

  • GC10P104213
  • GC10P102449

Summaries for RPARP-AS1 Gene

GeneCards Summary for RPARP-AS1 Gene

RPARP-AS1 (RPARP Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RPARP-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPARP-AS1 Gene

Genomics for RPARP-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPARP-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPARP-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPARP-AS1 Gene

Genomic Locations for RPARP-AS1 Gene
chr10:102,438,136-102,461,106
(GRCh38/hg38)
Size:
22,971 bases
Orientation:
Plus strand
chr10:104,209,574-104,220,863
(GRCh37/hg19)
Size:
11,290 bases
Orientation:
Plus strand

Genomic View for RPARP-AS1 Gene

Genes around RPARP-AS1 on UCSC Golden Path with GeneCards custom track
RPARP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RPARP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPARP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPARP-AS1 Gene

Proteins for RPARP-AS1 Gene

Post-translational modifications for RPARP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPARP-AS1 Gene

Domains & Families for RPARP-AS1 Gene

Gene Families for RPARP-AS1 Gene

genes like me logo Genes that share domains with RPARP-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPARP-AS1 Gene

Function for RPARP-AS1 Gene

Phenotypes From GWAS Catalog for RPARP-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPARP-AS1 Gene

Localization for RPARP-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPARP-AS1 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPARP-AS1 Gene

Pathways & Interactions for RPARP-AS1 Gene

PathCards logo

SuperPathways for RPARP-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPARP-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPARP-AS1 Gene

Drugs & Compounds for RPARP-AS1 Gene

No Compound Related Data Available

Transcripts for RPARP-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RPARP-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BF575_9606 lncRNA 445 4

Ensembl: ENST00000594818 (view in UCSC) ,

LncBook: HSALNT0167439,

LNCipedia: RPARP-AS1:15,

NONCODE: NONHSAT016124.2,

URS00008C041B_9606 lncRNA 631 3

Ensembl: ENST00000596366 (view in UCSC) ,

LncBook: HSALNT0167441,

NONCODE: NONHSAT016125.2,

URS000075B6B9_9606 lncRNA 1592 2

HGNC: 45238,

RefSeq: NR_038937,

URS00008BC5A1_9606 lncRNA 1556 2

Ensembl: ENST00000492465 (view in UCSC) ,

LNCipedia: RPARP-AS1:11,

URS00008BC4D5_9606 lncRNA 431 2

Ensembl: ENST00000596045 (view in UCSC) ,

LncBook: HSALNT0167442, HSALNT0167443,

RPARP-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RPARP-AS1 Gene

4 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPARP-AS1 Gene

No ASD Table

Relevant External Links for RPARP-AS1 Gene

GeneLoc Exon Structure for
RPARP-AS1

Expression for RPARP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPARP-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPARP-AS1

genes like me logo Genes that share expression patterns with RPARP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPARP-AS1 Gene

Orthologs for RPARP-AS1 Gene

Evolution for RPARP-AS1 Gene

ENSEMBL:
Gene Tree for RPARP-AS1 (if available)
TreeFam:
Gene Tree for RPARP-AS1 (if available)

No data available for Orthologs for RPARP-AS1 Gene

Paralogs for RPARP-AS1 Gene

No data available for Paralogs for RPARP-AS1 Gene

Variants for RPARP-AS1 Gene

Additional dbSNP identifiers (rs#s) for RPARP-AS1 Gene

Additional Variant Information for RPARP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPARP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPARP-AS1 Gene

Disorders for RPARP-AS1 Gene

No disorders were found for RPARP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPARP-AS1 Gene

Publications for RPARP-AS1 Gene

  1. Genome-wide association study of autistic-like traits in a general population study of young adults. (PMID: 24133439) Jones RM … Moses EK (Frontiers in human neuroscience 2013) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  4. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3

Products for RPARP-AS1 Gene

Sources for RPARP-AS1 Gene