Aliases for ROR1-AS1 Gene

Data sources for ROR1-AS1 Gene:

Subcategory (RNA class) for ROR1-AS1 Gene

lncRNA

Aliases for ROR1-AS1 Gene

External Ids for ROR1-AS1 Gene

Summaries for ROR1-AS1 Gene

GeneCards Summary for ROR1-AS1 Gene

ROR1-AS1 (ROR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ROR1-AS1 include Mantle Cell Lymphoma.

Additional gene information for ROR1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ROR1-AS1 Gene

Genomics for ROR1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ROR1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J064171 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.6 -630 3.5 ZSCAN16 BCL11A FEZF1 ZEB1 ZNF610 CEBPB FOXA2 ZNF639 KLF7 ZNF843 HSALNG0004144 ROR1-AS1 piR-36588-010 ITGB3BP EFCAB7 LINC01359 DLEU2L UBE2U PGM1 ROR1
GH01J064110 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 260.5 +59.9 59889 3.3 JUND RCOR1 GATA2 POLR2A OSR2 CHD2 EP300 USF1 FOS ZNF600 ROR1-AS1 HSALNG0004141 piR-37895-005 UBE2U ROR1
GH01J064136 Enhancer 0.8 Ensembl ENCODE 11.1 +33.9 33888 3.7 CTCF CEBPB REST TRIM22 SMC3 RAD21 ZNF189 RB1 ZNF143 ZNF350 ROR1-AS1 ITGB3BP UBE2U ROR1 piR-37895-005 HSALNG0004141
GH01J064062 Enhancer 0.4 Ensembl ENCODE 10.7 +107.3 107317 3.1 ZNF211 ROR1-AS1 ITGB3BP ENSG00000200508 HSALNG0004141 HSALNG0004140 UBE2U ROR1
GH01J064147 Enhancer 0.3 Ensembl 11.4 +23.5 23541 2 NFE2 ATF2 ROR1-AS1 UBE2U piR-37895-005 HSALNG0004144 HSALNG0004141 ROR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ROR1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ROR1-AS1 Gene

Latest Assembly
chr1:64,092,117-64,171,542
(GRCh38/hg38)
Size:
79,426 bases
Orientation:
Minus strand

Previous Assembly
chr1:64,560,125-64,579,474
(GRCh37/hg19 by Entrez Gene)
Size:
19,350 bases
Orientation:
Minus strand

chr1:64,560,125-64,636,980
(GRCh37/hg19 by Ensembl)
Size:
76,856 bases
Orientation:
Minus strand

Genomic View for ROR1-AS1 Gene

Genes around ROR1-AS1 on UCSC Golden Path with GeneCards custom track
ROR1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ROR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ROR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ROR1-AS1 Gene

Proteins for ROR1-AS1 Gene

Post-translational modifications for ROR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ROR1-AS1 Gene

Domains & Families for ROR1-AS1 Gene

Gene Families for ROR1-AS1 Gene

genes like me logo Genes that share domains with ROR1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ROR1-AS1 Gene

Function for ROR1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ROR1-AS1 Gene

Localization for ROR1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ROR1-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ROR1-AS1 Gene

Pathways & Interactions for ROR1-AS1 Gene

PathCards logo

SuperPathways for ROR1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ROR1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ROR1-AS1 Gene

Drugs & Compounds for ROR1-AS1 Gene

No Compound Related Data Available

Transcripts for ROR1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ROR1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042770C_9606 lncRNA 1580 4

Ensembl: ENST00000412349 (view in UCSC) ,

LncBook: HSALNT0008227,

LNCipedia: ROR1-AS1:4,

NONCODE: NONHSAT003701.2,

URS00002EF616_9606 lncRNA 2189 3

Ensembl: ENST00000424995 (view in UCSC) ,

LNCipedia: ROR1-AS1:1,

NONCODE: NONHSAT003703.2,

URS000075CF40_9606 lncRNA 2104 2

RefSeq: NR_110665,

LNCipedia: ROR1-AS1:6,

URS000075B1F5_9606 lncRNA 1574 1

RefSeq: NR_110666,

URS0000EED479_9606 lncRNA 655 1

Ensembl: ENST00000657702 (view in UCSC) ,

ROR1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ROR1-AS1 Gene

2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ROR1-AS1 Gene

No ASD Table

Relevant External Links for ROR1-AS1 Gene

GeneLoc Exon Structure for
ROR1-AS1

Expression for ROR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ROR1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ROR1-AS1

genes like me logo Genes that share expression patterns with ROR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ROR1-AS1 Gene

Orthologs for ROR1-AS1 Gene

Evolution for ROR1-AS1 Gene

ENSEMBL:
Gene Tree for ROR1-AS1 (if available)
TreeFam:
Gene Tree for ROR1-AS1 (if available)

No data available for Orthologs for ROR1-AS1 Gene

Paralogs for ROR1-AS1 Gene

No data available for Paralogs for ROR1-AS1 Gene

Variants for ROR1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ROR1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ROR1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830037 CNV gain 17160897

Additional Variant Information for ROR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ROR1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ROR1-AS1 Gene

Disorders for ROR1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ROR1-AS1 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
mantle cell lymphoma
  • lymphoma, mantle cell
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ROR1-AS1

genes like me logo Genes that share disorders with ROR1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ROR1-AS1 Gene

Publications for ROR1-AS1 Gene

  1. ROR1-AS1 promotes tumorigenesis of colorectal cancer via targeting Wnt/β-catenin. (PMID: 31389604) Liao T … Lv C (European review for medical and pharmacological sciences 2019) 2 3
  2. Upregulation of long non-coding RNA ROR1-AS1 promotes cell growth and migration in bladder cancer by regulation of miR-504. (PMID: 31929567) Chen Q … Fu L (PloS one 2020) 3
  3. LncRNA ROR1‑AS1 high expression and its prognostic significance in liver cancer. (PMID: 31746401) Zhang Z … Liu Y (Oncology reports 2020) 3
  4. Long noncoding RNA ROR1-AS1 enhances lung adenocarcinoma metastasis and induces epithelial-mesenchymal transition by sponging miR-375. (PMID: 31983094) Xu N … Li H (Journal of B.U.ON. : official journal of the Balkan Union of Oncology 2019) 3
  5. Long non-coding RNA ROR1-AS1 enhances colorectal cancer metastasis by targeting miR-375. (PMID: 31486489) Wang FZ … Zhang MC (European review for medical and pharmacological sciences 2019) 3

Products for ROR1-AS1 Gene

Sources for ROR1-AS1 Gene