Aliases for ROCR Gene

Data sources for ROCR Gene:

Subcategory (RNA class) for ROCR Gene

lncRNA

Aliases for ROCR Gene

External Ids for ROCR Gene

Previous HGNC Symbols for ROCR Gene

  • LINC02095

Summaries for ROCR Gene

GeneCards Summary for ROCR Gene

ROCR (Regulator Of Chondrogenesis RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ROCR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ROCR Gene

Genomics for ROCR Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ROCR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J072029 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 265.1 +27.5 27458 2.4 ZBTB10 SP1 BCL11A POLR2A CTCF ELF1 ZIC2 ZNF513 IRF4 ZNF341 ROCR LINC01152 piR-38351-219 SOX9
GH17J072058 Promoter 0.3 Ensembl 256.3 0.0 -28 0.6 ROCR HSALNG0118530 LOC102723517 SOX9 ENSG00000288605 SOX9-AS1
GH17J072033 Enhancer 0.7 Ensembl 13.4 +23.8 23772 1 SP1 BCL11A TRIM22 IRF4 CBFB RFX5 BATF NFATC1 IKZF1 ATF2 ROCR LINC01152 piR-38351-219 LOC102723517 SOX9 ENSG00000288605
GH17J072028 Enhancer 0.3 FANTOM5 Ensembl 9 +30.5 30472 0.4 ROCR SOX9 LINC01152 HSALNG0118520
GH17J072047 Enhancer 0.3 Ensembl 8 +10.9 10872 0.4 ZIC2 ROCR piR-38351-219 LOC102723517 SOX9 ENSG00000288605 SOX9-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ROCR on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ROCR Gene

Latest Assembly
chr17:72,021,850-72,058,073
(GRCh38/hg38)
Size:
36,224 bases
Orientation:
Minus strand

Previous Assembly
chr17:70,017,992-70,022,120
(GRCh37/hg19 by Entrez Gene)
Size:
4,129 bases
Orientation:
Minus strand

chr17:70,017,992-70,030,233
(GRCh37/hg19 by Ensembl)
Size:
12,242 bases
Orientation:
Minus strand

Genomic View for ROCR Gene

Genes around ROCR on UCSC Golden Path with GeneCards custom track
ROCR in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ROCR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ROCR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ROCR Gene

Proteins for ROCR Gene

Post-translational modifications for ROCR Gene

No Post-translational modifications

No data available for DME Specific Peptides for ROCR Gene

Domains & Families for ROCR Gene

Gene Families for ROCR Gene

genes like me logo Genes that share domains with ROCR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ROCR Gene

Function for ROCR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ROCR Gene

Localization for ROCR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ROCR Gene

Pathways & Interactions for ROCR Gene

PathCards logo

SuperPathways for ROCR Gene

No Data Available

Gene Ontology (GO) - Biological Process for ROCR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ROCR Gene

Drugs & Compounds for ROCR Gene

No Compound Related Data Available

Transcripts for ROCR Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ROCR Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009AF450_9606 lncRNA 961 4

Ensembl: ENST00000630770 (view in UCSC) ,

LncBook: HSALNT0244793,

LNCipedia: lnc-SLC39A11-10:47,

NONCODE: NONHSAT176531.1,

URS00008B793E_9606 lncRNA 640 4

Ensembl: ENST00000412640 (view in UCSC) ,

LncBook: HSALNT0244788,

LNCipedia: lnc-SLC39A11-10:46,

NONCODE: NONHSAT055645.2,

URS0000290D59_9606 lncRNA 581 4

Ensembl: ENST00000540802 (view in UCSC) ,

LncBook: HSALNT0244786,

LNCipedia: lnc-SLC39A11-10:45,

NONCODE: NONHSAT055644.2,

URS00008BF3C3_9606 lncRNA 579 4

Ensembl: ENST00000424417 (view in UCSC) ,

LncBook: HSALNT0244791,

LNCipedia: lnc-SLC39A11-10:41, lnc-SLC39A11-10:44,

NONCODE: NONHSAT055646.2,

URS000042A810_9606 lncRNA 323 4

Ensembl: ENST00000543512 (view in UCSC) ,

LncBook: HSALNT0244758,

LNCipedia: lnc-SLC39A11-10:51,

NONCODE: NONHSAT055637.2,

ROCR in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ROCR Gene

3 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ROCR Gene

No ASD Table

Relevant External Links for ROCR Gene

GeneLoc Exon Structure for
ROCR

Expression for ROCR Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ROCR

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ROCR Gene

Orthologs for ROCR Gene

Evolution for ROCR Gene

ENSEMBL:
Gene Tree for ROCR (if available)
TreeFam:
Gene Tree for ROCR (if available)

No data available for Orthologs for ROCR Gene

Paralogs for ROCR Gene

No data available for Paralogs for ROCR Gene

Variants for ROCR Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for ROCR Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for ROCR Gene

Variant ID Type Subtype PubMed ID
esv3573809 CNV gain 25503493

Additional Variant Information for ROCR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ROCR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ROCR Gene

Disorders for ROCR Gene

Additional Disease Information for ROCR

No disorders were found for ROCR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ROCR Gene

Publications for ROCR Gene

  1. The long non-coding RNA ROCR contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells. (PMID: 29084806) Barter MJ … Young DA (Development (Cambridge, England) 2017) 2 3
  2. LncRNA-mediated regulation of SOX9 expression in basal subtype breast cancer cells. (PMID: 31690584) Tariq A … Prasanth KV (RNA (New York, N.Y.) 2020) 3
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for ROCR Gene

Sources for ROCR Gene