Aliases for ROCR Gene

Subcategory (RNA class) for ROCR Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ROCR Gene

  • Regulator Of Chondrogenesis RNA 2 3 5
  • Long Intergenic Non-Protein Coding RNA 2095 2 3
  • ROCR 2 5
  • NONHSAG022651.2 91
  • Lnc-SLC39A11-10 165
  • HSALNG0118528 164
  • LINC02095 3

External Ids for ROCR Gene

Previous HGNC Symbols for ROCR Gene

  • LINC02095

Summaries for ROCR Gene

GeneCards Summary for ROCR Gene

ROCR (Regulator Of Chondrogenesis RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ROCR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ROCR Gene

Genomics for ROCR Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ROCR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J072029 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 615.5 +3.6 3578 2.2 SP1 CTCF PRDM10 KDM1A POLR2A BACH1 LARP7 STAT3 PRDM1 ZIC2 ROCR LINC01152 SOX9
GH17J072033 Enhancer 0.7 Ensembl 613.7 -0.3 -308 1.2 SP1 STAT3 IKZF2 RCOR1 TRIM22 PKNOX1 EED ARID3A DPF2 RUNX3 ROCR LINC01152 piR-38351-219 LOC102723517 SOX9 SOX9-AS1
GH17J072032 Enhancer 0.3 Ensembl 614.7 +0.9 892 0.8 RCOR1 GATA2 ROCR LINC01152 SOX9
GH17J072027 Enhancer 0.4 FANTOM5 9.1 +6.3 6307 0 POLR2A SMARCA4 ROCR SOX9 LINC01152 piR-60107
GH17J072007 Enhancer 0.5 Ensembl 5 +25.5 25492 1.2 JUND FOSL2 RCOR1 YY1 CHD2 GATA2 LINC01152 ROCR piR-60107 SOX9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ROCR on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ROCR Gene

Genomic Locations for ROCR Gene
chr17:72,021,850-72,034,093
(GRCh38/hg38)
Size:
12,244 bases
Orientation:
Minus strand
chr17:70,017,992-70,030,233
(GRCh37/hg19)
Size:
12,242 bases
Orientation:
Minus strand

Genomic View for ROCR Gene

Genes around ROCR on UCSC Golden Path with GeneCards custom track
ROCR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ROCR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ROCR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ROCR Gene

Proteins for ROCR Gene

No data available for DME Specific Peptides for ROCR Gene

Domains & Families for ROCR Gene

Gene Families for ROCR Gene

genes like me logo Genes that share domains with ROCR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ROCR Gene

Function for ROCR Gene

Phenotypes From GWAS Catalog for ROCR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ROCR Gene

Localization for ROCR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ROCR Gene

Pathways & Interactions for ROCR Gene

PathCards logo

SuperPathways for ROCR Gene

No Data Available

Gene Ontology (GO) - Biological Process for ROCR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ROCR Gene

Drugs & Compounds for ROCR Gene

No Compound Related Data Available

Transcripts for ROCR Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ROCR Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000042A810_9606 lncRNA 323 4

Ensembl: ENST00000543512 (view in UCSC) ,

LncBook: HSALNT0244758,

LNCipedia: lnc-SLC39A11-10:51,

NONCODE: NONHSAT055637.2,

URS000075C0E6_9606 lncRNA 363 2

HGNC: 52946,

RefSeq: NR_110876,

URS0000DBB332_9606 lncRNA 624 1

Ensembl: ENST00000430908 (view in UCSC) ,

URS00008B7BB2_9606 lncRNA 5836 3

LncBook: HSALNT0244783,

LNCipedia: lnc-SLC39A11-10:48,

NONCODE: NONHSAT055643.2,

URS00008B8EF5_9606 lncRNA 2051 3

LncBook: HSALNT0244766,

LNCipedia: lnc-SLC39A11-10:50,

NONCODE: NONHSAT055639.2,

ROCR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ROCR Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ROCR Gene

No ASD Table

Relevant External Links for ROCR Gene

GeneLoc Exon Structure for
ROCR

Expression for ROCR Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ROCR

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ROCR Gene

Orthologs for ROCR Gene

Evolution for ROCR Gene

ENSEMBL:
Gene Tree for ROCR (if available)
TreeFam:
Gene Tree for ROCR (if available)

No data available for Orthologs for ROCR Gene

Paralogs for ROCR Gene

No data available for Paralogs for ROCR Gene

Variants for ROCR Gene

Additional dbSNP identifiers (rs#s) for ROCR Gene

Structural Variations from Database of Genomic Variants (DGV) for ROCR Gene

Variant ID Type Subtype PubMed ID
esv3573809 CNV gain 25503493

Additional Variant Information for ROCR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ROCR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ROCR Gene

Disorders for ROCR Gene

No disorders were found for ROCR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ROCR Gene

Publications for ROCR Gene

  1. The long non-coding RNA ROCR contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells. (PMID: 29084806) Barter MJ … Young DA (Development (Cambridge, England) 2017) 2 3
  2. LncRNA-mediated regulation of SOX9 expression in basal subtype breast cancer cells. (PMID: 31690584) Tariq A … Prasanth KV (RNA (New York, N.Y.) 2020) 3
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for ROCR Gene

Sources for ROCR Gene