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Aliases for RNY4P18 Gene

Subcategory (RNA class) for RNY4P18 Gene

Y RNA

Aliases for RNY4P18 Gene

  • RNA, Ro-Associated Y4 Pseudogene 18 2 3 5

External Ids for RNY4P18 Gene

ORGUL Members for RNY4P18 Gene

Previous GeneCards Identifiers for RNY4P18 Gene

  • GC00U922407
  • GC09U901479
  • GC09M113860

Summaries for RNY4P18 Gene

GeneCards Summary for RNY4P18 Gene

RNY4P18 (RNA, Ro-Associated Y4 Pseudogene 18) is a Pseudogene, and is affiliated with the Y RNA class.

Additional gene information for RNY4P18 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY4P18 Gene

Genomics for RNY4P18 Gene

GeneHancer (GH) Regulatory Elements for RNY4P18 Gene

Promoters and enhancers for RNY4P18 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I111099 Enhancer 0.9 ENCODE 0.8 -2.2 -2195 1.1 PKNOX1 FEZF1 ZNF2 GLIS2 ZNF213 SP3 TSHZ1 ZNF488 ZNF623 ZNF610 LPAR1 GC09M111098 RNY4P18 MIR7702
GH09I111094 Enhancer 0.8 Ensembl ENCODE 0.8 +2.5 2533 1.5 PKNOX1 NR2F1 ZNF10 JUNB BATF POLR2A GLIS1 IKZF1 PRDM10 FOS LPAR1 GC09M111098 RNY4P18
GH09I111078 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +18.8 18812 0.4 SRF PKNOX1 ZBED1 BMI1 DPF2 ATF2 RELA ZNF217 IKZF1 NFATC1 LPAR1 ECPAS GC09M111098 RNY4P18
GH09I111065 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +29.8 29806 3.7 TRIM22 ELF1 DPF2 GATA3 POLR2A IKZF1 ZNF24 RCOR1 ATF7 IKZF2 LPAR1 ZNF483 GC09M111098 RNY4P18
GH09I111109 Enhancer 0.6 Ensembl ENCODE 0.4 -11.7 -11692 0.2 POLR2A RUNX3 LPAR1 GC09M111098 RNY4P18 MIR7702
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNY4P18 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNY4P18 Gene

Genomic Locations for RNY4P18 Gene
chr9:111,097,325-111,097,413
(GRCh38/hg38)
Size:
89 bases
Orientation:
Minus strand
chr9:113,859,605-113,859,693
(GRCh37/hg19)

Genomic View for RNY4P18 Gene

Genes around RNY4P18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY4P18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY4P18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY4P18 Gene

Proteins for RNY4P18 Gene

Post-translational modifications for RNY4P18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY4P18 Gene

Domains & Families for RNY4P18 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY4P18 Gene

Function for RNY4P18 Gene

Phenotypes From GWAS Catalog for RNY4P18 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY4P18 Gene

Localization for RNY4P18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNY4P18 Gene

Pathways & Interactions for RNY4P18 Gene

SuperPathways for RNY4P18 Gene

No Data Available

Interacting Proteins for RNY4P18 Gene

Gene Ontology (GO) - Biological Process for RNY4P18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY4P18 Gene

Drugs & Compounds for RNY4P18 Gene

No Compound Related Data Available

Transcripts for RNY4P18 Gene

mRNA/cDNA for RNY4P18 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNY4P18 Gene

No ASD Table

Relevant External Links for RNY4P18 Gene

GeneLoc Exon Structure for
RNY4P18
ECgene alternative splicing isoforms for
RNY4P18

Expression for RNY4P18 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNY4P18 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY4P18 Gene:

RNY4P18
genes like me logo Genes that share expression patterns with RNY4P18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNY4P18 Gene

Orthologs for RNY4P18 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNY4P18 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 34
  • 99 (a)
OneToOne
Species where no ortholog for RNY4P18 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY4P18 Gene

ENSEMBL:
Gene Tree for RNY4P18 (if available)
TreeFam:
Gene Tree for RNY4P18 (if available)

Paralogs for RNY4P18 Gene

No data available for Paralogs for RNY4P18 Gene

Variants for RNY4P18 Gene

Additional Variant Information for RNY4P18 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY4P18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNY4P18 Gene

Disorders for RNY4P18 Gene

No disorders were found for RNY4P18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY4P18 Gene

Publications for RNY4P18 Gene

No publications were found for RNY4P18 Gene.

Products for RNY4P18 Gene

Sources for RNY4P18 Gene

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