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Aliases for RNY4 Gene

Subcategory (RNA class) for RNY4 Gene


Quality Score for this RNA gene is


Aliases for RNY4 Gene

  • RNA, Ro-Associated Y4 2 3 5
  • RNA, Y4 Small Cytoplasmic (Associated With Ro Protein) 2 3
  • HY4 3
  • Y4 3

External Ids for RNY4 Gene

ORGUL Members for RNY4 Gene

Previous GeneCards Identifiers for RNY4 Gene

  • GC07U990084
  • GC07P148292
  • GC07P148663
  • GC07P142739

Summaries for RNY4 Gene

GeneCards Summary for RNY4 Gene

RNY4 (RNA, Ro-Associated Y4) is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for RNY4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY4 Gene

Genomics for RNY4 Gene

GeneHancer (GH) Regulatory Elements for RNY4 Gene

Promoters and enhancers for RNY4 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I148962 Promoter/Enhancer 1.5 Ensembl ENCODE 550.8 +0.3 283 2.6 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 IRF4 GC07P148964 RNY4 ZNF777 ZNF786 LOC155060 ZNF783 ZNF767P EZH2 PDIA4 ENSG00000271664
GH07I148965 Enhancer 1.2 Ensembl ENCODE 0.8 +3.3 3323 1.8 PKNOX1 ATF1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 GTF3C2 ZNF777 LOC155060 ZNF783 ZNF767P ZNF786 ENSG00000271664 PDIA4 RNY4 GC07P149014
GH07I148975 Enhancer 0.7 ENCODE 0.4 +13.3 13279 1.2 BCOR PKNOX1 E4F1 GTF3C2 CTBP1 ADNP ZNF143 THAP11 SMARCA5 SMARCE1 GC07P149014 RNY4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNY4 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RNY4 gene promoter:

Genomic Locations for RNY4 Gene

Genomic Locations for RNY4 Gene
96 bases
Plus strand

Genomic View for RNY4 Gene

Genes around RNY4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY4 Gene

Proteins for RNY4 Gene

Post-translational modifications for RNY4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY4 Gene

Domains & Families for RNY4 Gene

Gene Families for RNY4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNY4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY4 Gene

Function for RNY4 Gene

Molecular function for RNY4 Gene

GENATLAS Biochemistry:
small cytoplasmic ribonucleoprotein RY4,component of Ro ribonucleoprotein

Phenotypes From GWAS Catalog for RNY4 Gene

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY4 Gene

Localization for RNY4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNY4 Gene

Pathways & Interactions for RNY4 Gene

No Data Available

Interacting Proteins for RNY4 Gene

Gene Ontology (GO) - Biological Process for RNY4 Gene


No data available for Pathways by source and SIGNOR curated interactions for RNY4 Gene

Drugs & Compounds for RNY4 Gene

(1) Drugs for RNY4 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(1) Additional Compounds for RNY4 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RNY4: view

Transcripts for RNY4 Gene

mRNA/cDNA for RNY4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNY4 Gene

No ASD Table

Relevant External Links for RNY4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNY4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNY4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY4 Gene:

genes like me logo Genes that share expression patterns with RNY4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNY4 Gene

Orthologs for RNY4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNY4 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia Y_RNA 34
  • 100 (a)
(Canis familiaris)
Mammalia Y_RNA 34
  • 99 (a)
(Bos Taurus)
Mammalia Y_RNA 34
  • 98 (a)
Species where no ortholog for RNY4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY4 Gene

Gene Tree for RNY4 (if available)
Gene Tree for RNY4 (if available)

Paralogs for RNY4 Gene

No data available for Paralogs for RNY4 Gene

Variants for RNY4 Gene

Sequence variations from dbSNP and Humsavar for RNY4 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1001964928 -- 148,963,090(+) C/T upstream_transcript_variant
rs1001995874 -- 148,963,307(+) G/A/C upstream_transcript_variant
rs1002843873 -- 148,962,220(+) AAAGAAAGAAA/AAAGAAA upstream_transcript_variant
rs1003584054 -- 148,963,168(+) T/C upstream_transcript_variant
rs1004123573 -- 148,963,320(+) G/A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNY4 Gene

Variant ID Type Subtype PubMed ID
nsv831183 CNV loss 17160897

Additional Variant Information for RNY4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNY4 Gene

Disorders for RNY4 Gene

Additional Disease Information for RNY4

No disorders were found for RNY4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNY4 Gene

Publications for RNY4 Gene

  1. The human Y4 small cytoplasmic RNA gene is controlled by upstream elements and resides on chromosome 7 with all other hY scRNA genes. (PMID: 7520568) Maraia RJ … Darlington GJ (Nucleic acids research 1994) 2 3 58
  2. Ro-associated Y RNAs in metazoans: evolution and diversification. (PMID: 17470436) Perreault J … Boire G (Molecular biology and evolution 2007) 3 58
  3. Comparative proteomic analysis of blue light signaling components in the Arabidopsis cryptochrome 1 mutant. (PMID: 17464191) Phee BK … Hahn TR (Molecules and cells 2007) 22 58
  4. PP7 is a positive regulator of blue light signaling in Arabidopsis. (PMID: 12724537) Møller SG … Chua NH (The Plant cell 2003) 22 58
  5. Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time. (PMID: 10759510) Reed JW … Millar AJ (Plant physiology 2000) 22 58

Products for RNY4 Gene

Sources for RNY4 Gene

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