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Aliases for RNY3P9 Gene

Subcategory (RNA class) for RNY3P9 Gene

Y RNA

Aliases for RNY3P9 Gene

  • RNA, Ro-Associated Y3 Pseudogene 9 2 3 5

External Ids for RNY3P9 Gene

ORGUL Members for RNY3P9 Gene

Previous GeneCards Identifiers for RNY3P9 Gene

  • GC00U933897
  • GC13P040801

Summaries for RNY3P9 Gene

GeneCards Summary for RNY3P9 Gene

RNY3P9 (RNA, Ro-Associated Y3 Pseudogene 9) is a Pseudogene, and is affiliated with the Y RNA class.

Additional gene information for RNY3P9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY3P9 Gene

Genomics for RNY3P9 Gene

GeneHancer (GH) Regulatory Elements for RNY3P9 Gene

Promoters and enhancers for RNY3P9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I040230 Enhancer 0.7 Ensembl ENCODE 0.8 +4.5 4475 1.5 POLR2A MAFG FOS RAD21 MAFK NR2F2 RNY3P9 GC13P040257 LINC00548 LINC00598
GH13I040232 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +7.8 7808 4.8 BCOR RXRA CEBPB ZMYM3 CEBPG NR2F2 JUND ATF3 POLR2A CEBPA FOXO1 RNY3P9 GC13P040257 LINC00548 LINC00598
GH13I040251 Enhancer 0.5 Ensembl 0.3 +24.7 24674 0.2 CTCF REST MNT RAD21 GC13P040257 RNY3P9 GC13M040250 LINC00548 LINC00598
GH13I040252 Enhancer 0.3 ENCODE 0.3 +25.1 25052 0.2 REST GC13P040257 GC13M040250 RNY3P9 LINC00548 LINC00598
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNY3P9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNY3P9 Gene

Genomic Locations for RNY3P9 Gene
chr13:40,226,827-40,226,932
(GRCh38/hg38)
Size:
106 bases
Orientation:
Plus strand
chr13:40,800,964-40,801,069
(GRCh37/hg19)

Genomic View for RNY3P9 Gene

Genes around RNY3P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY3P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY3P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY3P9 Gene

Proteins for RNY3P9 Gene

Post-translational modifications for RNY3P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY3P9 Gene

Domains & Families for RNY3P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY3P9 Gene

Function for RNY3P9 Gene

Phenotypes From GWAS Catalog for RNY3P9 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY3P9 Gene

Localization for RNY3P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNY3P9 Gene

Pathways & Interactions for RNY3P9 Gene

SuperPathways for RNY3P9 Gene

No Data Available

Interacting Proteins for RNY3P9 Gene

Gene Ontology (GO) - Biological Process for RNY3P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY3P9 Gene

Drugs & Compounds for RNY3P9 Gene

No Compound Related Data Available

Transcripts for RNY3P9 Gene

mRNA/cDNA for RNY3P9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNY3P9 Gene

No ASD Table

Relevant External Links for RNY3P9 Gene

GeneLoc Exon Structure for
RNY3P9
ECgene alternative splicing isoforms for
RNY3P9

Expression for RNY3P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNY3P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY3P9 Gene:

RNY3P9
genes like me logo Genes that share expression patterns with RNY3P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNY3P9 Gene

Orthologs for RNY3P9 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNY3P9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 34
  • 93 (a)
OneToOne
Species where no ortholog for RNY3P9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY3P9 Gene

ENSEMBL:
Gene Tree for RNY3P9 (if available)
TreeFam:
Gene Tree for RNY3P9 (if available)

Paralogs for RNY3P9 Gene

No data available for Paralogs for RNY3P9 Gene

Variants for RNY3P9 Gene

Additional Variant Information for RNY3P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY3P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNY3P9 Gene

Disorders for RNY3P9 Gene

No disorders were found for RNY3P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY3P9 Gene

Publications for RNY3P9 Gene

No publications were found for RNY3P9 Gene.

Products for RNY3P9 Gene

Sources for RNY3P9 Gene

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