Aliases for RNY3P9 Gene

Aliases for RNY3P9 Gene

  • RNY3 Pseudogene 9 2 3 5
  • RNA, Ro-Associated Y3 Pseudogene 9 2 3
  • RNY3P9 5

External Ids for RNY3P9 Gene

Previous GeneCards Identifiers for RNY3P9 Gene

  • GC00U933897
  • GC13P040801

Summaries for RNY3P9 Gene

GeneCards Summary for RNY3P9 Gene

RNY3P9 (RNY3 Pseudogene 9) is a Pseudogene.

Additional gene information for RNY3P9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNY3P9 Gene

Genomics for RNY3P9 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNY3P9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J040230 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 +7.2 7174 7.6 KDM1A SP1 CEBPB JUND NR3C1 MAFK MAFG NR2F2 BCOR POLR2A FOXO1 RNY3P9 RF00019-028 piR-38351-128 LINC00548 LINC00598 COG6
GH13J040271 Promoter/Enhancer 1 Ensembl ENCODE 0.3 +45.4 45358 2 CREB1 ZNF629 PRDM1 ZIC2 SCRT2 CEBPB JUND ESR1 CTBP1 NR3C1 piR-38351-128 RF00019-028 RNY3P9 LINC00548 LINC00598 FOXO1 COG6
GH13J040251 Enhancer 0.7 Ensembl ENCODE 0.3 +25.2 25173 1.6 YY1 SMC3 CTCF REST RAD21 MNT GATA2 RNY3P9 RF00019-028 piR-38351-128 LINC00548 LINC00598 FOXO1 COG6
GH13J040268 Enhancer 0.6 Ensembl ENCODE 0.3 +42.5 42470 1.1 CREB1 NR2F2 POLR2A TAL1 CBFA2T2 CBFA2T3 piR-38351-128 RF00019-028 RNY3P9 LINC00548 LINC00598 FOXO1 COG6
GH13J040247 Enhancer 0.3 Ensembl 0.4 +21.3 21274 0.6 SPI1 RF00019-028 RNY3P9 piR-38351-128 LINC00548 LINC00598 FOXO1 COG6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNY3P9 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNY3P9 Gene

Genomic Locations for RNY3P9 Gene
chr13:40,226,827-40,226,932
(GRCh38/hg38)
Size:
106 bases
Orientation:
Plus strand
chr13:40,800,964-40,801,069
(GRCh37/hg19)
Size:
106 bases
Orientation:
Plus strand

Genomic View for RNY3P9 Gene

Genes around RNY3P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY3P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY3P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY3P9 Gene

Proteins for RNY3P9 Gene

Post-translational modifications for RNY3P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY3P9 Gene

Domains & Families for RNY3P9 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNY3P9 Gene

Function for RNY3P9 Gene

Phenotypes From GWAS Catalog for RNY3P9 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY3P9 Gene

Localization for RNY3P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNY3P9 Gene

Pathways & Interactions for RNY3P9 Gene

PathCards logo

SuperPathways for RNY3P9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNY3P9 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNY3P9 Gene

Drugs & Compounds for RNY3P9 Gene

No Compound Related Data Available

Transcripts for RNY3P9 Gene

mRNA/cDNA for RNY3P9 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY3P9 Gene

No ASD Table

Relevant External Links for RNY3P9 Gene

GeneLoc Exon Structure for
RNY3P9

Expression for RNY3P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNY3P9 Gene

genes like me logo Genes that share expression patterns with RNY3P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNY3P9 Gene

Orthologs for RNY3P9 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNY3P9 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 31
  • 93 (a)
OneToOne
Species where no ortholog for RNY3P9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNY3P9 Gene

ENSEMBL:
Gene Tree for RNY3P9 (if available)
TreeFam:
Gene Tree for RNY3P9 (if available)

Paralogs for RNY3P9 Gene

No data available for Paralogs for RNY3P9 Gene

Variants for RNY3P9 Gene

Additional Variant Information for RNY3P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY3P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNY3P9 Gene

Disorders for RNY3P9 Gene

No disorders were found for RNY3P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY3P9 Gene

Publications for RNY3P9 Gene

No publications were found for RNY3P9 Gene.

No data available for Mastermind for RNY3P9 Gene

Products for RNY3P9 Gene

Sources for RNY3P9 Gene