Aliases for RNY3P12 Gene

Aliases for RNY3P12 Gene

  • RNY3 Pseudogene 12 2 3 5
  • RNA, Ro-Associated Y3 Pseudogene 12 2 3

External Ids for RNY3P12 Gene

Summaries for RNY3P12 Gene

GeneCards Summary for RNY3P12 Gene

RNY3P12 (RNY3 Pseudogene 12) is a Pseudogene.

Additional gene information for RNY3P12 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNY3P12 Gene

Genomics for RNY3P12 Gene

GeneHancer (GH) Regulatory Elements for RNY3P12 Gene

Promoters and enhancers for RNY3P12 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J092335 Enhancer 0.3 Ensembl 750.6 +0.8 838 0.2 PRDM6 RNY3P12 RF00019-010 ENSG00000252993 piR-48301-043 MARCHF5 NONHSAG006530.2
GH10J092289 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 -42.9 -42913 3.5 SP1 ZBTB40 CTCF SIX5 ZBTB6 FOXA1 MLX RBPJ POLR2A ATF1 CPEB3 MARCHF5 NONHSAG006530.2 BTAF1 NHP2P1 RF00019-010 RNY3P12
GH10J092327 Enhancer 0.9 Ensembl ENCODE 0.4 -5.5 -5463 4.8 HLF RAD21 ELF3 SP1 MAFK CEBPG PRDM1 ZNF384 PKNOX1 CEBPA CPEB3 BTAF1 TNKS2 RNY3P12 RF00019-010 MARCHF5 NONHSAG006530.2
GH10J092302 Enhancer 0.7 Ensembl ENCODE 0.3 -29.6 -29562 7.4 ZNF121 POU5F1 PRDM1 PKNOX1 ZSCAN4 USF1 ZNF18 FOS PRDM6 ZBTB33 CPEB3 BTAF1 NHP2P1 EXOC6 TNKS2-AS1 PPP1R3C MARCHF5 NONHSAG006530.2 RF00019-010 RNY3P12
GH10J092354 Enhancer 0.5 Ensembl ENCODE 0.4 +19.6 19638 2.2 BCL6 NANOG BTAF1 RF00019-010 RNY3P12 piR-48301-043 MARCHF5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNY3P12 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNY3P12 Gene

Genomic Locations for RNY3P12 Gene
chr10:92,334,463-92,334,564
(GRCh38/hg38)
Size:
102 bases
Orientation:
Plus strand
chr10:94,094,220-94,094,321
(GRCh37/hg19)
Size:
102 bases
Orientation:
Plus strand

Genomic View for RNY3P12 Gene

Genes around RNY3P12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY3P12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY3P12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY3P12 Gene

Proteins for RNY3P12 Gene

Post-translational modifications for RNY3P12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY3P12 Gene

Domains & Families for RNY3P12 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNY3P12 Gene

Function for RNY3P12 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY3P12 Gene

Localization for RNY3P12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNY3P12 Gene

Pathways & Interactions for RNY3P12 Gene

PathCards logo

SuperPathways for RNY3P12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNY3P12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY3P12 Gene

Drugs & Compounds for RNY3P12 Gene

No Compound Related Data Available

Transcripts for RNY3P12 Gene

mRNA/cDNA for RNY3P12 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNY3P12 Gene

No ASD Table

Relevant External Links for RNY3P12 Gene

GeneLoc Exon Structure for
RNY3P12
ECgene alternative splicing isoforms for
RNY3P12

Expression for RNY3P12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNY3P12 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY3P12 Gene:

RNY3P12
genes like me logo Genes that share expression patterns with RNY3P12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNY3P12 Gene

Orthologs for RNY3P12 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNY3P12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 33
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia Y_RNA 33
  • 80 (a)
OneToMany
Species where no ortholog for RNY3P12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY3P12 Gene

ENSEMBL:
Gene Tree for RNY3P12 (if available)
TreeFam:
Gene Tree for RNY3P12 (if available)

Paralogs for RNY3P12 Gene

No data available for Paralogs for RNY3P12 Gene

Variants for RNY3P12 Gene

Additional Variant Information for RNY3P12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY3P12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNY3P12 Gene

Disorders for RNY3P12 Gene

No disorders were found for RNY3P12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNY3P12 Gene

Publications for RNY3P12 Gene

No publications were found for RNY3P12 Gene.

No data available for External Links for RNY3P12 Gene

Products for RNY3P12 Gene

Sources for RNY3P12 Gene