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Aliases for RNY3 Gene

Subcategory (RNA class) for RNY3 Gene

Y RNA

Quality Score for this RNA gene is

13

Aliases for RNY3 Gene

  • RNA, Ro-Associated Y3 2 3 5
  • RNA, Y3 Small Cytoplasmic (Associated With Ro Protein) 2 3
  • HY3 3
  • Y3 3

External Ids for RNY3 Gene

ORGUL Members for RNY3 Gene

Previous GeneCards Identifiers for RNY3 Gene

  • GC07U990083
  • GC07P148312
  • GC07P148680
  • GC07P142759
  • GC07P148987
  • GC07P148994
  • GC07P148995
  • GC07P148997
  • GC07P148999
  • GC07P149001
  • GC07P149004
  • GC07P149006

Summaries for RNY3 Gene

GeneCards Summary for RNY3 Gene

RNY3 (RNA, Ro-Associated Y3) is an RNA Gene, and is affiliated with the Y RNA class. Diseases associated with RNY3 include Kidney Cancer and Bladder Cancer.

Additional gene information for RNY3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNY3 Gene

Genomics for RNY3 Gene

GeneHancer (GH) Regulatory Elements for RNY3 Gene

Promoters and enhancers for RNY3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J148982 Promoter/Enhancer 1.5 Ensembl ENCODE 650.7 -0.3 -257 2 PKNOX1 FOXA2 ARNT ARID4B FEZF1 ZNF2 IRF4 ZNF213 E2F8 ZNF143 RNY3 GC07P149015 GC07P149013 ZNF783 ENSG00000271664 ZNF777 ZNF212 ZNF398 ZNF282 ZNF767P
GH07J148985 Enhancer 0.8 ENCODE 650.7 +1.9 1909 0.2 HDAC1 ARNT NFRKB GTF3C2 SMARCA5 ZBTB2 ZBTB11 ZNF184 SMARCA4 IKZF1 GC07P149013 GC07M148988 GHET1 RNY1 RNY3 ZNF212 ZNF282 ZNF398 ENSG00000271664 PDIA4
GH07J148986 Promoter/Enhancer 1.6 Ensembl ENCODE 0.7 +3.4 3385 2.6 PKNOX1 SMAD1 ARNT ARID4B SIN3A ZNF2 ZNF766 ZNF213 E2F8 ZNF143 GC07M148988 GHET1 RNY1 ZNF783 LOC155060 ZNF212 ZNF398 ENSG00000271664 ZNF777 ZNF767P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNY3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNY3 Gene

Genomic Locations for RNY3 Gene
chr7:148,983,755-148,983,856
(GRCh38/hg38)
Size:
102 bases
Orientation:
Plus strand
chr7:148,680,847-148,680,948
(GRCh37/hg19)

Genomic View for RNY3 Gene

Genes around RNY3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNY3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNY3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNY3 Gene

Proteins for RNY3 Gene

Post-translational modifications for RNY3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNY3 Gene

Domains & Families for RNY3 Gene

Gene Families for RNY3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNY3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNY3 Gene

Function for RNY3 Gene

Molecular function for RNY3 Gene

GENATLAS Biochemistry:
small cytoplasmic ribonucleoprotein RY3,component of Ro ribonucleoprotein

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNY3 Gene

Localization for RNY3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNY3 Gene

Pathways & Interactions for RNY3 Gene

No Data Available

Interacting Proteins for RNY3 Gene

Gene Ontology (GO) - Biological Process for RNY3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNY3 Gene

Drugs & Compounds for RNY3 Gene

No Compound Related Data Available

Transcripts for RNY3 Gene

mRNA/cDNA for RNY3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNY3 Gene

No ASD Table

Relevant External Links for RNY3 Gene

GeneLoc Exon Structure for
RNY3
ECgene alternative splicing isoforms for
RNY3

Expression for RNY3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNY3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNY3 Gene:

RNY3
genes like me logo Genes that share expression patterns with RNY3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNY3 Gene

Orthologs for RNY3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNY3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Y_RNA 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Y_RNA 34
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rny3 34
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia Y_RNA 34
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia Y_RNA 34
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia Y_RNA 34
  • 87 (a)
OneToMany
chicken
(Gallus gallus)
Aves Y_RNA 34
  • 85 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Y_RNA 34
  • 90 (a)
OneToMany
Species where no ortholog for RNY3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNY3 Gene

ENSEMBL:
Gene Tree for RNY3 (if available)
TreeFam:
Gene Tree for RNY3 (if available)

Paralogs for RNY3 Gene

No data available for Paralogs for RNY3 Gene

Variants for RNY3 Gene

Sequence variations from dbSNP and Humsavar for RNY3 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000457534 -- 148,982,330(+) A/G upstream_transcript_variant
rs1000829480 -- 148,982,180(+) C/T upstream_transcript_variant
rs1001082716 -- 148,981,847(+) G/C upstream_transcript_variant
rs1001133485 -- 148,982,131(+) G/C upstream_transcript_variant
rs1002643788 -- 148,983,644(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNY3 Gene

Variant ID Type Subtype PubMed ID
nsv528358 CNV loss 19592680
nsv608973 CNV loss 21841781
nsv831183 CNV loss 17160897

Additional Variant Information for RNY3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNY3

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNY3 Gene

Disorders for RNY3 Gene

MalaCards: The human disease database

(7) MalaCards diseases for RNY3 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
kidney cancer
  • renal cell carcinoma
bladder cancer
  • bladder cancer, somatic
cervical cancer
  • cervical cancer, somatic
prostate cancer
  • prostate cancer, susceptibility to
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
Search RNY3 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for RNY3

genes like me logo Genes that share disorders with RNY3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RNY3 Gene

Publications for RNY3 Gene

  1. Genes for two small cytoplasmic Ro RNAs are adjacent and appear to be single-copy in the human genome. (PMID: 6187471) Wolin SL … Steitz JA (Cell 1983) 2 3 58
  2. The Y3** ncRNA promotes the 3' end processing of histone mRNAs. (PMID: 26443846) Köhn M … Hüttelmaier S (Genes & development 2015) 3 58
  3. Ro-associated Y RNAs in metazoans: evolution and diversification. (PMID: 17470436) Perreault J … Boire G (Molecular biology and evolution 2007) 3 58
  4. Calreticulin binds hYRNA and the 52-kDa polypeptide component of the Ro/SS-A ribonucleoprotein autoantigen. (PMID: 8666824) Cheng ST … Sontheimer RD (Journal of immunology (Baltimore, Md. : 1950) 1996) 3 58
  5. Gene encoding human Ro-associated autoantigen Y5 RNA. (PMID: 8836182) Maraia R … Green ED (Nucleic acids research 1996) 3 58

Products for RNY3 Gene

Sources for RNY3 Gene

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