Aliases for RNVU1-34 Gene

Aliases for RNVU1-34 Gene

  • RNA, Variant U1 Small Nuclear 34 2 3 5
  • RNA, U1 Small Nuclear 85, Pseudogene 2 3
  • RNVU1-34 2 5
  • U1A7 2 3
  • RNU1-85P 3
  • RF00003 168

External Ids for RNVU1-34 Gene

Previous HGNC Symbols for RNVU1-34 Gene

  • RNU1-85P

Previous GeneCards Identifiers for RNVU1-34 Gene

  • GC17U902912

Summaries for RNVU1-34 Gene

GeneCards Summary for RNVU1-34 Gene

RNVU1-34 (RNA, Variant U1 Small Nuclear 34) is a Pseudogene.

Rfam classification for RNVU1-34 Gene

Additional gene information for RNVU1-34 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNVU1-34 Gene

Genomics for RNVU1-34 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNVU1-34 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J058679 Enhancer 1.3 Ensembl ENCODE 600.7 +0.1 60 1.5 ARHGAP35 SP1 HNRNPL PRDM10 ZNF629 RFX1 SIX5 LEF1 SOX13 IKZF1 RF00003-038 RNU1-52P RNVU1-34 SRSF1 MKS1 TRIM37 DHX40 SKA2 SMG8 VEZF1
GH17J058686 Enhancer 0.3 Ensembl ENCODE 0.4 -7.5 -7533 0.6 ENSG00000266826 TEX14 RNVU1-34 SEPTIN4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNVU1-34 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNVU1-34 Gene

Genomic Locations for RNVU1-34 Gene
chr17:58,679,527-58,679,690
(GRCh38/hg38)
Size:
164 bases
Orientation:
Minus strand
chr17:56,756,888-56,757,051
(GRCh37/hg19)
Size:
164 bases
Orientation:
Minus strand

Genomic View for RNVU1-34 Gene

Genes around RNVU1-34 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNVU1-34 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNVU1-34 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNVU1-34 Gene

Proteins for RNVU1-34 Gene

Post-translational modifications for RNVU1-34 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNVU1-34 Gene

Domains & Families for RNVU1-34 Gene

Gene Families for RNVU1-34 Gene

genes like me logo Genes that share domains with RNVU1-34: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNVU1-34 Gene

Function for RNVU1-34 Gene

Phenotypes From GWAS Catalog for RNVU1-34 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNVU1-34 Gene

Localization for RNVU1-34 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNVU1-34 Gene

Pathways & Interactions for RNVU1-34 Gene

PathCards logo

SuperPathways for RNVU1-34 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNVU1-34 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNVU1-34 Gene

Drugs & Compounds for RNVU1-34 Gene

No Compound Related Data Available

Transcripts for RNVU1-34 Gene

mRNA/cDNA for RNVU1-34 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 RNACentral transcripts :
1 ENA transcripts :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RNVU1-34 Gene

No ASD Table

Relevant External Links for RNVU1-34 Gene

GeneLoc Exon Structure for
RNVU1-34

Expression for RNVU1-34 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNVU1-34 Gene

Orthologs for RNVU1-34 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNVU1-34 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U1 31
  • 93 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia U1 31 31 31
  • 68 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Gm24691 31
  • 66 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia U1 31
  • 64 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii U1 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31
  • 57 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea U1 31
  • 70 (a)
OneToMany
Species where no ortholog for RNVU1-34 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNVU1-34 Gene

ENSEMBL:
Gene Tree for RNVU1-34 (if available)
TreeFam:
Gene Tree for RNVU1-34 (if available)

Paralogs for RNVU1-34 Gene

No data available for Paralogs for RNVU1-34 Gene

Variants for RNVU1-34 Gene

Additional Variant Information for RNVU1-34 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNVU1-34

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNVU1-34 Gene

Disorders for RNVU1-34 Gene

No disorders were found for RNVU1-34 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNVU1-34 Gene

Publications for RNVU1-34 Gene

  1. U1-like snRNAs lacking complementarity to canonical 5' splice sites. (PMID: 16829670) Kyriakopoulou C … Virtanen A (RNA (New York, N.Y.) 2006) 2 3

Products for RNVU1-34 Gene

Sources for RNVU1-34 Gene