Aliases for RNVU1-3 Gene

Subcategory (RNA class) for RNVU1-3 Gene

snRNA

Quality Score for this RNA gene is

13

Aliases for RNVU1-3 Gene

  • RNA, Variant U1 Small Nuclear 3 2 3 5
  • RNA, Variant U1 Small Nuclear 12 2 3
  • RNU1-113 3
  • RNU1-151 3
  • RNVU1-12 3
  • RNVU1-3 2
  • RF00003 174
  • VU1.12 3
  • VU1.3 3

External Ids for RNVU1-3 Gene

Previous HGNC Symbols for RNVU1-3 Gene

  • RNVU1-12

Previous GeneCards Identifiers for RNVU1-3 Gene

  • GC01P143717

Summaries for RNVU1-3 Gene

GeneCards Summary for RNVU1-3 Gene

RNVU1-3 (RNA, Variant U1 Small Nuclear 3) is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RNVU1-3 Gene

Additional gene information for RNVU1-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNVU1-3 Gene

Genomics for RNVU1-3 Gene

GeneHancer (GH) Regulatory Elements for RNVU1-3 Gene

Promoters and enhancers for RNVU1-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J148399 Promoter 0.3 Ensembl 750.6 -0.8 -814 3.8 ENSG00000231551 LOC100132057 RNVU1-3 lnc-PPIAL4G-3 lnc-NUDT4B-1-001 LINC01138
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNVU1-3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNVU1-3 Gene

Genomic Locations for RNVU1-3 Gene
chr1:148,402,715-148,402,876
(GRCh38/hg38)
Size:
162 bases
Orientation:
Plus strand
chr1:143,687,359-143,687,519
(GRCh37/hg19)
Size:
161 bases
Orientation:
Plus strand

Genomic View for RNVU1-3 Gene

Genes around RNVU1-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNVU1-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNVU1-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNVU1-3 Gene

Proteins for RNVU1-3 Gene

Post-translational modifications for RNVU1-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNVU1-3 Gene

Domains & Families for RNVU1-3 Gene

Gene Families for RNVU1-3 Gene

genes like me logo Genes that share domains with RNVU1-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNVU1-3 Gene

Function for RNVU1-3 Gene

Gene Ontology (GO) - Molecular Function for RNVU1-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030627 pre-mRNA 5'-splice site binding IEA --
genes like me logo Genes that share ontologies with RNVU1-3: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNVU1-3 Gene

Localization for RNVU1-3 Gene

Gene Ontology (GO) - Cellular Components for RNVU1-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005685 U1 snRNP IEA --
genes like me logo Genes that share ontologies with RNVU1-3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RNVU1-3 Gene

Pathways & Interactions for RNVU1-3 Gene

PathCards logo

SuperPathways for RNVU1-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNVU1-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000395 mRNA 5'-splice site recognition IEA --
genes like me logo Genes that share ontologies with RNVU1-3: view

No data available for Pathways by source and SIGNOR curated interactions for RNVU1-3 Gene

Drugs & Compounds for RNVU1-3 Gene

No Compound Related Data Available

Transcripts for RNVU1-3 Gene

mRNA/cDNA for RNVU1-3 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RNVU1-3 Gene

No ASD Table

Relevant External Links for RNVU1-3 Gene

GeneLoc Exon Structure for
RNVU1-3
ECgene alternative splicing isoforms for
RNVU1-3

Expression for RNVU1-3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNVU1-3 Gene

genes like me logo Genes that share expression patterns with RNVU1-3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNVU1-3 Gene

Orthologs for RNVU1-3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNVU1-3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 33
  • 67 (a)
ManyToMany
Species where no ortholog for RNVU1-3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNVU1-3 Gene

ENSEMBL:
Gene Tree for RNVU1-3 (if available)
TreeFam:
Gene Tree for RNVU1-3 (if available)

Paralogs for RNVU1-3 Gene

No data available for Paralogs for RNVU1-3 Gene

Variants for RNVU1-3 Gene

Sequence variations from dbSNP and Humsavar for RNVU1-3 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs113298482 -- 148,401,616(+) T/C upstream_transcript_variant
rs1156319754 -- 148,401,862(+) G/A/C upstream_transcript_variant
rs1156562715 -- 148,402,551(+) C/G upstream_transcript_variant
rs1156842745 -- 148,400,721(+) G/A upstream_transcript_variant
rs1156909172 -- 148,401,268(+) A/C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNVU1-3 Gene

Variant ID Type Subtype PubMed ID
dgv187n106 CNV deletion 24896259
dgv327n100 CNV gain 25217958
dgv66e199 CNV deletion 23128226
esv2660400 CNV deletion 23128226
esv2667036 CNV deletion 23128226
esv2677125 CNV deletion 23128226
esv2761299 CNV gain+loss 21179565
esv27827 CNV gain 19812545
esv3572675 CNV gain 25503493
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1078224 CNV deletion 25765185
nsv1132304 CNV duplication 24896259
nsv1143453 CNV deletion 24896259
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv510984 OTHER inversion 20534489
nsv547650 CNV loss 21841781
nsv946218 CNV duplication 23825009
nsv946327 CNV duplication 23825009
nsv951837 CNV deletion 24416366

Additional Variant Information for RNVU1-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNVU1-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNVU1-3 Gene

Disorders for RNVU1-3 Gene

Additional Disease Information for RNVU1-3

No disorders were found for RNVU1-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNVU1-3 Gene

Publications for RNVU1-3 Gene

  1. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. (PMID: 23070852) O'Reilly D … Murphy S (Genome research 2013) 2 3 56

Products for RNVU1-3 Gene

Sources for RNVU1-3 Gene