Aliases for RNVU1-29 Gene

Subcategory (RNA class) for RNVU1-29 Gene

snRNA

Number of RNA Genes sources:

3 / 17

Aliases for RNVU1-29 Gene

  • RNA, Variant U1 Small Nuclear 29 2 3 5
  • RNVU1-29 2 5
  • RNVU1-18 2
  • RF00003 168
  • RNU1-1 2
  • RNU1-3 2
  • RNU1-4 2
  • 3PGW_R 167
  • RNU1-2 2
  • 3PGW_N 167
  • 6QX9_1 167

External Ids for RNVU1-29 Gene

Previous GeneCards Identifiers for RNVU1-29 Gene

  • GC01U906093

Summaries for RNVU1-29 Gene

GeneCards Summary for RNVU1-29 Gene

RNVU1-29 (RNA, Variant U1 Small Nuclear 29) is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RNVU1-29 Gene

Additional gene information for RNVU1-29 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNVU1-29 Gene

Genomics for RNVU1-29 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNVU1-29 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J146376 Promoter 0.3 Ensembl 600.7 +0.3 294 3.4 HSALNG0006924 RNVU1-29 LOC100996756 SEC22B4P PPIAL4H LOC112268274 NBPF12
GH01J146381 Enhancer 0.2 Ensembl 0.7 +4.7 4694 1 RNVU1-29 LOC100996756 SEC22B4P LOC112268274 PPIAL4H NBPF12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNVU1-29 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNVU1-29 Gene

Genomic Locations for RNVU1-29 Gene
chr1:146,376,807-146,376,970
(GRCh38/hg38)
Size:
164 bases
Orientation:
Plus strand

Genomic View for RNVU1-29 Gene

Genes around RNVU1-29 on UCSC Golden Path with GeneCards custom track
RNVU1-29 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RNVU1-29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNVU1-29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RNVU1-29 Gene

Proteins for RNVU1-29 Gene

Post-translational modifications for RNVU1-29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNVU1-29 Gene

Domains & Families for RNVU1-29 Gene

Gene Families for RNVU1-29 Gene

genes like me logo Genes that share domains with RNVU1-29: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNVU1-29 Gene

Function for RNVU1-29 Gene

miRNA for RNVU1-29 Gene

miRTarBase miRNAs that target RNVU1-29

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RNVU1-29 Gene

Localization for RNVU1-29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNVU1-29 Gene

Pathways & Interactions for RNVU1-29 Gene

PathCards logo

SuperPathways for RNVU1-29 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNVU1-29 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNVU1-29 Gene

Drugs & Compounds for RNVU1-29 Gene

No Compound Related Data Available

Transcripts for RNVU1-29 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RNVU1-29 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000032B6B6_9606 snRNA 164 6

HGNC: 10120, 10123, 10128, 10130, 37496,

RefSeq: NR_004400, NR_004408, NR_004421, NR_004427, NR_004430,

Ensembl: ENST00000383925 (view in UCSC) , ENST00000384010 (view in UCSC) , ENST00000384278 (view in UCSC) , ENST00000384659 (view in UCSC) , ENST00000384782 (view in UCSC) ,

PDBe: 3PGW_N, 3PGW_R, 6QX9_1,

Rfam: RF00003,

ENA: View 6 records in RNAcentral

URS000059CC50_9606 snRNA 163 2

Rfam: RF00003,

ENA: AH002965.2:106..268:ncRNA, AH002966.2:379..541:ncRNA, AH002968.2:379..541:ncRNA, AH002969.2:379..541:ncRNA, M14587.1:106..268:ncRNA,

URS00000B27D7_9606 snRNA 162 2

Rfam: RF00003,

ENA: V00590.1:1..162:ncRNA,

URS00004EE8AA_9606 snRNA 164 1

ENA: K00788.1:1..165:ncRNA,

URS000051BA34_9606 snRNA 49 1

ENA: K03097.1:1..50:ncRNA,

RNVU1-29 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RNVU1-29 Gene

No ASD Table

Relevant External Links for RNVU1-29 Gene

GeneLoc Exon Structure for
RNVU1-29

No data available for mRNA/cDNA for RNVU1-29 Gene

Expression for RNVU1-29 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNVU1-29 Gene

Orthologs for RNVU1-29 Gene

Evolution for RNVU1-29 Gene

ENSEMBL:
Gene Tree for RNVU1-29 (if available)
TreeFam:
Gene Tree for RNVU1-29 (if available)

No data available for Orthologs for RNVU1-29 Gene

Paralogs for RNVU1-29 Gene

No data available for Paralogs for RNVU1-29 Gene

Variants for RNVU1-29 Gene

Additional Variant Information for RNVU1-29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNVU1-29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNVU1-29 Gene

Disorders for RNVU1-29 Gene

No disorders were found for RNVU1-29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNVU1-29 Gene

Publications for RNVU1-29 Gene

No publications were found for RNVU1-29 Gene.

No data available for Mastermind for RNVU1-29 Gene

Products for RNVU1-29 Gene

Sources for RNVU1-29 Gene