Aliases for RNU7-71P Gene

Aliases for RNU7-71P Gene

  • RNA, U7 Small Nuclear 71 Pseudogene 2 3 5
  • U7.71 2 3
  • RNU7-71P 5

External Ids for RNU7-71P Gene

Previous GeneCards Identifiers for RNU7-71P Gene

  • GC16U900823
  • GC16M072855

Summaries for RNU7-71P Gene

GeneCards Summary for RNU7-71P Gene

RNU7-71P (RNA, U7 Small Nuclear 71 Pseudogene) is a Pseudogene.

Additional gene information for RNU7-71P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU7-71P Gene

Genomics for RNU7-71P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU7-71P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J072820 Enhancer 0.4 Ensembl 600.7 +1.0 991 0.8 RBM22 CTCF SSRP1 RF00066-076 RNU7-71P MN297385 LOC101927978 ENSG00000259768 LOC107984814
GH16J072819 Enhancer 0.3 Ensembl 0.7 +2.3 2264 0.9 BHLHE40 MN297385 RF00066-076 RNU7-71P LOC101927978 ENSG00000259768 LOC107984814
GH16J072830 Enhancer 0.3 Ensembl 0.4 -8.3 -8308 0.6 RUNX3 piR-61939 RNU7-71P RF00066-076 lnc-PMFBP1-4 LOC107984814
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU7-71P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU7-71P Gene

Genomic Locations for RNU7-71P Gene
chr16:72,821,933-72,821,992
(GRCh38/hg38)
Size:
60 bases
Orientation:
Minus strand
chr16:72,855,832-72,855,891
(GRCh37/hg19)
Size:
60 bases
Orientation:
Minus strand

Genomic View for RNU7-71P Gene

Genes around RNU7-71P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-71P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-71P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-71P Gene

Proteins for RNU7-71P Gene

Post-translational modifications for RNU7-71P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-71P Gene

Domains & Families for RNU7-71P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU7-71P Gene

Function for RNU7-71P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-71P Gene

Localization for RNU7-71P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-71P Gene

Pathways & Interactions for RNU7-71P Gene

PathCards logo

SuperPathways for RNU7-71P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU7-71P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU7-71P Gene

Drugs & Compounds for RNU7-71P Gene

No Compound Related Data Available

Transcripts for RNU7-71P Gene

mRNA/cDNA for RNU7-71P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-71P Gene

No ASD Table

Relevant External Links for RNU7-71P Gene

GeneLoc Exon Structure for
RNU7-71P

Expression for RNU7-71P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-71P Gene

Orthologs for RNU7-71P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-71P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U7 31
  • 97 (a)
OneToOne
Species where no ortholog for RNU7-71P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU7-71P Gene

ENSEMBL:
Gene Tree for RNU7-71P (if available)
TreeFam:
Gene Tree for RNU7-71P (if available)

Paralogs for RNU7-71P Gene

No data available for Paralogs for RNU7-71P Gene

Variants for RNU7-71P Gene

Additional Variant Information for RNU7-71P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-71P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-71P Gene

Disorders for RNU7-71P Gene

No disorders were found for RNU7-71P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-71P Gene

Publications for RNU7-71P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3

Products for RNU7-71P Gene

Sources for RNU7-71P Gene