Aliases for RNU7-6P Gene

Aliases for RNU7-6P Gene

  • RNA, U7 Small Nuclear 6 Pseudogene 2 3 5
  • RNA, Small Nuclear U7.6 Pseudogene 3
  • U7.6 3

External Ids for RNU7-6P Gene

Previous GeneCards Identifiers for RNU7-6P Gene

  • GC20U900319
  • GC20P050522
  • GC20P047268

Summaries for RNU7-6P Gene

GeneCards Summary for RNU7-6P Gene

RNU7-6P (RNA, U7 Small Nuclear 6 Pseudogene) is a Pseudogene.

Additional gene information for RNU7-6P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU7-6P Gene

Genomics for RNU7-6P Gene

GeneHancer (GH) Regulatory Elements for RNU7-6P Gene

Promoters and enhancers for RNU7-6P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J051906 Enhancer 0.6 Ensembl 500.7 +1.7 1731 1 KLF4 ZBTB17 MLLT1 ZNF8 FOXA1 KLF1 HLF SOX5 ELF3 GATAD2B RF00066-121 RNU7-6P SALL4
GH20J051903 Enhancer 0.4 Ensembl 500.7 -1.5 -1468 0.2 ZNF207 ZBTB1 KLF1 SREBF1 RF00026-650 RNU6-347P RF00066-121 RNU7-6P SALL4
GH20J051904 Enhancer 0.3 Ensembl 500.7 -1.1 -1069 0.2 KLF1 FOS RF00026-650 RNU6-347P RF00066-121 RNU7-6P SALL4
GH20J051797 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -104.8 -104799 6.2 ZNF217 CTCF TEAD4 ZIC2 SAP30 RFX1 CUX1 CHD1 TGIF2 EP300 SALL4 lnc-ATP9A-1 ADNP RNU7-6P ATP9A ZFP64 piR-43105-389
GH20J051930 Enhancer 1 Ensembl ENCODE 12.3 +26.0 26049 1.6 ZSCAN5C ZNF639 TCF7 TRIM28 ATF2 WT1 CREB1 NFIC TCF7L2 SMARCC1 RNU7-6P lnc-ZFP64-9 SALL4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU7-6P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-6P Gene

Genomic Locations for RNU7-6P Gene
chr20:51,904,969-51,905,030
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand
chr20:50,521,508-50,521,569
(GRCh37/hg19)
Size:
62 bases
Orientation:
Plus strand

Genomic View for RNU7-6P Gene

Genes around RNU7-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-6P Gene

Proteins for RNU7-6P Gene

Post-translational modifications for RNU7-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-6P Gene

Domains & Families for RNU7-6P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU7-6P Gene

Function for RNU7-6P Gene

Phenotypes From GWAS Catalog for RNU7-6P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-6P Gene

Localization for RNU7-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-6P Gene

Pathways & Interactions for RNU7-6P Gene

PathCards logo

SuperPathways for RNU7-6P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU7-6P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU7-6P Gene

Drugs & Compounds for RNU7-6P Gene

No Compound Related Data Available

Transcripts for RNU7-6P Gene

mRNA/cDNA for RNU7-6P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-6P Gene

No ASD Table

Relevant External Links for RNU7-6P Gene

GeneLoc Exon Structure for
RNU7-6P

Expression for RNU7-6P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-6P Gene

Orthologs for RNU7-6P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-6P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 31
  • 97 (a)
OneToOne
Species where no ortholog for RNU7-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-6P Gene

ENSEMBL:
Gene Tree for RNU7-6P (if available)
TreeFam:
Gene Tree for RNU7-6P (if available)

Paralogs for RNU7-6P Gene

No data available for Paralogs for RNU7-6P Gene

Variants for RNU7-6P Gene

Additional Variant Information for RNU7-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-6P Gene

Disorders for RNU7-6P Gene

Additional Disease Information for RNU7-6P

Genetic Association Database
(GAD)

No disorders were found for RNU7-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU7-6P Gene

Publications for RNU7-6P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 54
  2. Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia. (PMID: 19478329) Aston KI … Carrell DT (Journal of andrology 2009) 41 54

Products for RNU7-6P Gene

Sources for RNU7-6P Gene