Aliases for RNU7-6P Gene

Aliases for RNU7-6P Gene

  • RNA, U7 Small Nuclear 6 Pseudogene 2 3 5
  • U7.6 2 3
  • RNA, Small Nuclear U7.6 Pseudogene 3
  • RNU7-6P 5

External Ids for RNU7-6P Gene

Previous GeneCards Identifiers for RNU7-6P Gene

  • GC20U900319
  • GC20P050522
  • GC20P047268

Summaries for RNU7-6P Gene

GeneCards Summary for RNU7-6P Gene

RNU7-6P (RNA, U7 Small Nuclear 6 Pseudogene) is a Pseudogene.

Additional gene information for RNU7-6P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU7-6P Gene

Genomics for RNU7-6P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU7-6P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J051906 Enhancer 0.6 Ensembl 250.7 +1.7 1731 1 MLLT1 SOX5 ZNF8 FOXA1 ELF3 RXRB KLF1 GATAD2B HLF ZBTB17 RNU7-6P RF00066-119 HSALNG0130859 HSALNG0130861 SALL4 ZFP64
GH20J051797 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -104.8 -104799 6.2 ZNF654 ZNF600 SSRP1 ZSCAN16 BRCA1 POLR2A ZIC2 YY1 ZNF217 CTCF SALL4 HSALNG0130852 lnc-ATP9A-1 ADNP DPM1 PSMD10P1 ZFP64 RNU7-6P MOCS3 ATP9A
GH20J051930 Enhancer 1 Ensembl ENCODE 12.3 +26.0 26049 1.6 ZNF580 ATF2 NFIC ZNF639 TEAD3 ZNF843 TCF7L2 NFE2 PRDM6 BCL6 RNU7-6P lnc-ZFP64-9 HSALNG0130861 SALL4 ZFP64
GH20J052046 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 10.6 +143.1 143088 3.8 POLR2A ZIC2 FEZF1 ZNF341 ZNF610 CUX1 INSM2 GLIS1 ZNF18 SP1 HSALNG0130873 RNU7-6P lnc-ZFP64-6 HSALNG0130871 ZFP64 SALL4
GH20J051934 Enhancer 0.8 Ensembl 12.3 +29.4 29432 2.4 ZNF580 ATF2 ZNF10 ZIC2 FEZF1 ZNF639 KLF7 ZNF610 ZNF843 ZNF146 lnc-ZFP64-9 RNU7-6P lnc-ZFP64-8 HSALNG0130864 SALL4 ZFP64
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU7-6P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU7-6P Gene

Latest Assembly
chr20:51,904,969-51,905,030
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand

Previous Assembly
chr20:50,521,508-50,521,569
(GRCh37/hg19 by Entrez Gene)
Size:
62 bases
Orientation:
Plus strand

chr20:50,521,508-50,521,569
(GRCh37/hg19 by Ensembl)
Size:
62 bases
Orientation:
Plus strand

Genomic View for RNU7-6P Gene

Genes around RNU7-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-6P Gene

Proteins for RNU7-6P Gene

Post-translational modifications for RNU7-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-6P Gene

Domains & Families for RNU7-6P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU7-6P Gene

Function for RNU7-6P Gene

Phenotypes From GWAS Catalog for RNU7-6P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-6P Gene

Localization for RNU7-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-6P Gene

Pathways & Interactions for RNU7-6P Gene

PathCards logo

SuperPathways for RNU7-6P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU7-6P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU7-6P Gene

Drugs & Compounds for RNU7-6P Gene

No Compound Related Data Available

Transcripts for RNU7-6P Gene

mRNA/cDNA for RNU7-6P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-6P Gene

No ASD Table

Relevant External Links for RNU7-6P Gene

GeneLoc Exon Structure for
RNU7-6P

Expression for RNU7-6P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-6P Gene

Orthologs for RNU7-6P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-6P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U7 30
  • 97 (a)
OneToOne
Species where no ortholog for RNU7-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU7-6P Gene

ENSEMBL:
Gene Tree for RNU7-6P (if available)
TreeFam:
Gene Tree for RNU7-6P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU7-6P

Paralogs for RNU7-6P Gene

No data available for Paralogs for RNU7-6P Gene

Variants for RNU7-6P Gene

Additional Variant Information for RNU7-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-6P
Leiden Open Variation Database (LOVD)
RNU7-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-6P Gene

Disorders for RNU7-6P Gene

No disorders were found for RNU7-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-6P Gene

Publications for RNU7-6P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3
  2. Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia. (PMID: 19478329) Aston KI … Carrell DT (Journal of andrology 2009) 40

Products for RNU7-6P Gene

Sources for RNU7-6P Gene