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Aliases for RNU7-50P Gene

Subcategory (RNA class) for RNU7-50P Gene

snRNA

Aliases for RNU7-50P Gene

  • RNA, U7 Small Nuclear 50 Pseudogene 2 3 5
  • RNA, Small Nuclear U7.50 Pseudogene 3
  • U7.50 3

External Ids for RNU7-50P Gene

ORGUL Members for RNU7-50P Gene

Previous GeneCards Identifiers for RNU7-50P Gene

  • GC11U901145
  • GC11P003803

Summaries for RNU7-50P Gene

GeneCards Summary for RNU7-50P Gene

RNU7-50P (RNA, U7 Small Nuclear 50 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU7-50P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-50P Gene

Genomics for RNU7-50P Gene

GeneHancer (GH) Regulatory Elements for RNU7-50P Gene

Promoters and enhancers for RNU7-50P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I003781 Enhancer 0.8 Ensembl ENCODE dbSUPER 550.8 +0.5 505 1 ZNF362 REST SPI1 GC11P003781 RNU7-50P ART5 GC11P003794 NUP98 GC11M003656 GC11M003657
GH11I003784 Enhancer 0.6 Ensembl dbSUPER 550.8 +1.9 1906 0.2 HDGF ZBTB33 ZBTB8A GC11P003781 RNU7-50P GC11P003794 NUP98 GC11M003656 GC11M003657
GH11I003721 Enhancer 0.8 Ensembl ENCODE 10.9 -58.6 -58550 2.5 PAF1 JUN MAX SIN3A SP1 JUND POLR2A FOS FOSL2 MYC NUP98 RNU7-50P CHRNA10 ART5 RNU6-1143P GC11P003749 GC11M003656 GC11M003657
GH11I003817 Enhancer 0.6 ENCODE 11.3 +36.0 36025 1 SMARCA5 BCOR RNF2 CBFA2T3 ZMYM3 ZNF148 SP1 HDAC2 ADNP KDM1A RHOG RNU7-50P PGAP2 GC11P003814 GC11P003826 GC11M003656 GC11M003657
GH11I003816 Enhancer 0.5 ENCODE 11.3 +35.5 35457 0.1 SMARCA5 BCOR SP1 HDAC2 ADNP ZMYM3 KDM1A RHOG RNU7-50P GC11P003814 GC11P003826 GC11M003656 GC11M003657 PGAP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-50P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-50P Gene

Genomic Locations for RNU7-50P Gene
chr11:3,781,395-3,781,456
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand
chr11:3,802,625-3,802,686
(GRCh37/hg19)

Genomic View for RNU7-50P Gene

Genes around RNU7-50P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-50P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-50P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-50P Gene

Proteins for RNU7-50P Gene

Post-translational modifications for RNU7-50P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-50P Gene

Domains & Families for RNU7-50P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-50P Gene

Function for RNU7-50P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-50P Gene

Localization for RNU7-50P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-50P Gene

Pathways & Interactions for RNU7-50P Gene

SuperPathways for RNU7-50P Gene

No Data Available

Interacting Proteins for RNU7-50P Gene

Gene Ontology (GO) - Biological Process for RNU7-50P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-50P Gene

Drugs & Compounds for RNU7-50P Gene

No Compound Related Data Available

Transcripts for RNU7-50P Gene

mRNA/cDNA for RNU7-50P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-50P Gene

No ASD Table

Relevant External Links for RNU7-50P Gene

GeneLoc Exon Structure for
RNU7-50P
ECgene alternative splicing isoforms for
RNU7-50P

Expression for RNU7-50P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-50P Gene

Orthologs for RNU7-50P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-50P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34
  • 92 (a)
OneToOne
Species where no ortholog for RNU7-50P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-50P Gene

ENSEMBL:
Gene Tree for RNU7-50P (if available)
TreeFam:
Gene Tree for RNU7-50P (if available)

Paralogs for RNU7-50P Gene

No data available for Paralogs for RNU7-50P Gene

Variants for RNU7-50P Gene

Additional Variant Information for RNU7-50P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-50P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-50P Gene

Disorders for RNU7-50P Gene

No disorders were found for RNU7-50P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-50P Gene

Publications for RNU7-50P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 58

Products for RNU7-50P Gene

Sources for RNU7-50P Gene

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