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Aliases for RNU7-39P Gene

Subcategory (RNA class) for RNU7-39P Gene

snRNA

Aliases for RNU7-39P Gene

  • RNA, U7 Small Nuclear 39 Pseudogene 2 3
  • RNA, Small Nuclear U7.39 Pseudogene 3
  • U7.39 3

External Ids for RNU7-39P Gene

ORGUL Members for RNU7-39P Gene

Previous GeneCards Identifiers for RNU7-39P Gene

  • GC12U900851
  • GC12P051404

Summaries for RNU7-39P Gene

GeneCards Summary for RNU7-39P Gene

RNU7-39P (RNA, U7 Small Nuclear 39 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU7-39P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-39P Gene

Genomics for RNU7-39P Gene

GeneHancer (GH) Regulatory Elements for RNU7-39P Gene

Promoters and enhancers for RNU7-39P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I051008 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.6 -1579 2 AFF1 HNF4A RAD21 SLC11A2 RNU7-39P GC12P051011 CSRNP2 TFCP2 ENSG00000274797
GH12I051011 Enhancer 0.7 ENCODE dbSUPER 550.8 +1.0 988 0.6 KLF1 PKNOX1 HMBOX1 ZBTB12 GC12P051011 RNU7-39P SLC11A2 GC12M051017 RNU6-87P
GH12I051009 Enhancer 0.5 Ensembl dbSUPER 0.8 -2.9 -2898 0.2 ZNF121 TFCP2 RNU7-39P SLC11A2 ENSG00000274797
GH12I051004 Enhancer 0.9 ENCODE dbSUPER 0.4 -5.4 -5357 2.7 CTCF ESRRA SIN3A RAD21 ZKSCAN1 CTBP1 GATA3 ZNF444 RCOR1 SMARCE1 SLC11A2 CSRNP2 METTL7A RNU7-39P ENSG00000274797
GH12I050984 Enhancer 1 Ensembl ENCODE 0.3 -24.8 -24811 3.7 FOXA2 ARID4B SIN3A ZSCAN9 RAD21 YY1 ARID2 ZNF143 FOS THAP11 SLC11A2 LETMD1 CSRNP2 RNU6-1273P RNU7-39P ENSG00000274797
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-39P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-39P Gene

Genomic Locations for RNU7-39P Gene
chr12:51,010,999-51,011,057
(GRCh38/hg38)
Size:
59 bases
Orientation:
Plus strand
chr12:51,404,782-51,404,840
(GRCh37/hg19)

Genomic View for RNU7-39P Gene

Genes around RNU7-39P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-39P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-39P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-39P Gene

Proteins for RNU7-39P Gene

Post-translational modifications for RNU7-39P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-39P Gene

Domains & Families for RNU7-39P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-39P Gene

Function for RNU7-39P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-39P Gene

Localization for RNU7-39P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-39P Gene

Pathways & Interactions for RNU7-39P Gene

SuperPathways for RNU7-39P Gene

No Data Available

Interacting Proteins for RNU7-39P Gene

Gene Ontology (GO) - Biological Process for RNU7-39P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-39P Gene

Drugs & Compounds for RNU7-39P Gene

No Compound Related Data Available

Transcripts for RNU7-39P Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-39P Gene

No ASD Table

Relevant External Links for RNU7-39P Gene

GeneLoc Exon Structure for
RNU7-39P
ECgene alternative splicing isoforms for
RNU7-39P

No data available for mRNA/cDNA for RNU7-39P Gene

Expression for RNU7-39P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-39P Gene

Orthologs for RNU7-39P Gene

No data available for Orthologs and Evolution for RNU7-39P Gene

Paralogs for RNU7-39P Gene

No data available for Paralogs for RNU7-39P Gene

Variants for RNU7-39P Gene

Additional Variant Information for RNU7-39P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-39P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-39P Gene

Disorders for RNU7-39P Gene

No disorders were found for RNU7-39P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-39P Gene

Publications for RNU7-39P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 58

Products for RNU7-39P Gene

Sources for RNU7-39P Gene

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