Aliases for RNU7-39P Gene

Aliases for RNU7-39P Gene

  • RNA, U7 Small Nuclear 39 Pseudogene 2 3
  • RNA, Small Nuclear U7.39 Pseudogene 3
  • U7.39 3

External Ids for RNU7-39P Gene

Previous GeneCards Identifiers for RNU7-39P Gene

  • GC12U900851
  • GC12P051404

Summaries for RNU7-39P Gene

GeneCards Summary for RNU7-39P Gene

RNU7-39P (RNA, U7 Small Nuclear 39 Pseudogene) is a Pseudogene.

Additional gene information for RNU7-39P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU7-39P Gene

Genomics for RNU7-39P Gene

GeneHancer (GH) Regulatory Elements for RNU7-39P Gene

Promoters and enhancers for RNU7-39P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J051008 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 500.7 -1.6 -1598 2.4 AFF1 SPI1 PRDM6 RAD21 HNF4A GATA1 HNRNPK RAD51 SP1 SLC11A2 RF00066-046 RNU7-39P CSRNP2 TFCP2 lnc-CSRNP2-2 lnc-CSRNP2-3
GH12J051011 Enhancer 0.6 ENCODE dbSUPER 500.7 +1.0 988 0.6 KLF1 ZBTB12 PKNOX1 HMBOX1 RF00066-046 RNU7-39P SLC11A2 RNU6-87P RF00026-239 lnc-CSRNP2-2
GH12J051004 Enhancer 0.9 ENCODE dbSUPER 0.4 -5.4 -5357 2.7 ZNF217 RFX1 REST CTBP1 SIN3A ESRRA CTCF GATA3 DPF2 MAZ SLC11A2 CSRNP2 METTL7A RF00066-046 RNU7-39P lnc-CSRNP2-3 lnc-CSRNP2-2
GH12J050991 Enhancer 0.4 Ensembl 0.4 -18.8 -18798 2.4 NFIC GATA3 NFIB SCRT2 lnc-CSRNP2-3 SLC11A2 LETMD1 RNU6-1273P CSRNP2 TFCP2 RF00066-046 RNU7-39P
GH12J050998 Enhancer 0.3 Ensembl 0.4 -11.5 -11498 2.6 FOSL2 FOS SLC11A2 TFCP2 lnc-CSRNP2-3 RF00066-046 RNU7-39P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU7-39P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-39P Gene

Genomic Locations for RNU7-39P Gene
chr12:51,010,999-51,011,057
(GRCh38/hg38)
Size:
59 bases
Orientation:
Plus strand
chr12:51,404,782-51,404,840
(GRCh37/hg19)
Size:
59 bases
Orientation:
Plus strand

Genomic View for RNU7-39P Gene

Genes around RNU7-39P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-39P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-39P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-39P Gene

Proteins for RNU7-39P Gene

Post-translational modifications for RNU7-39P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-39P Gene

Domains & Families for RNU7-39P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU7-39P Gene

Function for RNU7-39P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-39P Gene

Localization for RNU7-39P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-39P Gene

Pathways & Interactions for RNU7-39P Gene

PathCards logo

SuperPathways for RNU7-39P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU7-39P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU7-39P Gene

Drugs & Compounds for RNU7-39P Gene

No Compound Related Data Available

Transcripts for RNU7-39P Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-39P Gene

No ASD Table

Relevant External Links for RNU7-39P Gene

GeneLoc Exon Structure for
RNU7-39P

No data available for mRNA/cDNA for RNU7-39P Gene

Expression for RNU7-39P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-39P Gene

Orthologs for RNU7-39P Gene

No data available for Orthologs and Evolution for RNU7-39P Gene

Paralogs for RNU7-39P Gene

No data available for Paralogs for RNU7-39P Gene

Variants for RNU7-39P Gene

Additional Variant Information for RNU7-39P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-39P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-39P Gene

Disorders for RNU7-39P Gene

No disorders were found for RNU7-39P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-39P Gene

Publications for RNU7-39P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 54

Products for RNU7-39P Gene

Sources for RNU7-39P Gene