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Aliases for RNU7-28P Gene

Subcategory (RNA class) for RNU7-28P Gene

snRNA

Aliases for RNU7-28P Gene

  • RNA, U7 Small Nuclear 28 Pseudogene 2 3 5
  • RNA, Small Nuclear U7.28 Pseudogene 3
  • U7.28 3

External Ids for RNU7-28P Gene

ORGUL Members for RNU7-28P Gene

Previous GeneCards Identifiers for RNU7-28P Gene

  • GC11U901147

Summaries for RNU7-28P Gene

GeneCards Summary for RNU7-28P Gene

RNU7-28P (RNA, U7 Small Nuclear 28 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU7-28P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-28P Gene

Genomics for RNU7-28P Gene

GeneHancer (GH) Regulatory Elements for RNU7-28P Gene

Promoters and enhancers for RNU7-28P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J009843 Enhancer 0.2 Ensembl 600.7 +0.8 775 0.2 RNU7-28P GC11M009843 LOC101928008 SBF2
GH11J009861 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -19.0 -19025 2.2 ELF3 CTCF RAD21 PRDM10 ZIC2 GATAD2A ZNF143 REST TRIM22 TCF7L2 SBF2 LOC101928008 ENSG00000254865 RNU7-28P ENSG00000254765
GH11J009851 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -8.3 -8294 1.9 ZBTB20 JUN SBF2 RNU7-28P LOC101928008 ENSG00000254765
GH11J009857 Enhancer 0.8 ENCODE dbSUPER 0.4 -13.5 -13453 0.2 MAFK GATAD2A ZNF316 SOX13 TCF7 FOXA2 MAFG TEAD1 NFIL3 TEAD3 SBF2 RNU7-28P LOC101928008 ENSG00000254765
GH11J009858 Enhancer 0.9 ENCODE dbSUPER 0.4 -15.5 -15496 2.7 ELF3 MAFK PKNOX1 ZIC2 GATAD2A TCF7L2 SOX13 OSR2 ZBTB48 FOXP1 SBF2 LOC101928008 ZNF143 RNU7-28P ENSG00000254765
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU7-28P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-28P Gene

Genomic Locations for RNU7-28P Gene
chr11:9,843,815-9,843,876
(GRCh38/hg38)
Size:
62 bases
Orientation:
Minus strand
chr11:9,865,362-9,865,423
(GRCh37/hg19)
Size:
62 bases
Orientation:
Minus strand

Genomic View for RNU7-28P Gene

Genes around RNU7-28P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-28P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-28P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-28P Gene

Proteins for RNU7-28P Gene

Post-translational modifications for RNU7-28P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-28P Gene

Domains & Families for RNU7-28P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-28P Gene

Function for RNU7-28P Gene

Phenotypes From GWAS Catalog for RNU7-28P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-28P Gene

Localization for RNU7-28P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-28P Gene

Pathways & Interactions for RNU7-28P Gene

PathCards logo

SuperPathways for RNU7-28P Gene

No Data Available

Interacting Proteins for RNU7-28P Gene

Gene Ontology (GO) - Biological Process for RNU7-28P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-28P Gene

Drugs & Compounds for RNU7-28P Gene

No Compound Related Data Available

Transcripts for RNU7-28P Gene

mRNA/cDNA for RNU7-28P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-28P Gene

No ASD Table

Relevant External Links for RNU7-28P Gene

GeneLoc Exon Structure for
RNU7-28P
ECgene alternative splicing isoforms for
RNU7-28P

Expression for RNU7-28P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-28P Gene

Orthologs for RNU7-28P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-28P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 35
  • 100 (a)
OneToOne
Species where no ortholog for RNU7-28P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-28P Gene

ENSEMBL:
Gene Tree for RNU7-28P (if available)
TreeFam:
Gene Tree for RNU7-28P (if available)

Paralogs for RNU7-28P Gene

No data available for Paralogs for RNU7-28P Gene

Variants for RNU7-28P Gene

Additional Variant Information for RNU7-28P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-28P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-28P Gene

Disorders for RNU7-28P Gene

No disorders were found for RNU7-28P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-28P Gene

Publications for RNU7-28P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 58

Products for RNU7-28P Gene

Sources for RNU7-28P Gene

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